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Sdk1 Gene Detail
Summary
  • Symbol
    Sdk1
  • Name
    sidekick cell adhesion molecule 1
  • Synonyms
    6720466O15Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444413
    NCBI Gene: 330222
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:141227245-142201341 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 79.81 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    26642 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444413
 protein coding gene Chr5:141227245-142201377 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030309
 protein coding gene Chr5:146397367-147423184 (+)
A/J MGP_AJ_G0030278
 protein coding gene Chr5:140140484-141122344 (+)
AKR/J MGP_AKRJ_G0030210
 protein coding gene Chr5:144521489-145531393 (+)
BALB/cJ MGP_BALBcJ_G0030295
 protein coding gene Chr5:141383755-142349112 (+)
C3H/HeJ MGP_C3HHeJ_G0030006
 protein coding gene Chr5:145332007-146344437 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030740
 protein coding gene Chr5:151807975-152830209 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0027958
 protein coding gene Chr5:133964194-134932813 (+)
CAST/EiJ MGP_CASTEiJ_G0029411
 protein coding gene Chr5:144765141-145779636 (+)
CBA/J MGP_CBAJ_G0029976
 protein coding gene Chr5:157983792-159051765 (+)
DBA/2J MGP_DBA2J_G0030126
 protein coding gene Chr5:139937178-140902691 (+)
FVB/NJ MGP_FVBNJ_G0030081
 protein coding gene Chr5:139111663-140083169 (+)
LP/J MGP_LPJ_G0030212
 protein coding gene Chr5:147010372-148048829 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030112
 protein coding gene Chr5:160573734-161602567 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030780
 protein coding gene Chr5:144362532-145373882 (+)
PWK/PhJ MGP_PWKPhJ_G0029126
 protein coding gene Chr5:138976547-139953325 (+)
SPRET/EiJ MGP_SPRETEiJ_G0028962
 protein coding gene Chr5:142069280-143131415 (+)
WSB/EiJ MGP_WSBEiJ_G0029485
 protein coding gene Chr5:145149853-146166043 (+)



Homology
more
  • Human Ortholog
    SDK1, sidekick cell adhesion molecule 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SDK1, sidekick cell adhesion molecule 1
  • Links
    NCBI Gene ID: 221935
    neXtProt AC: NX_Q7Z5N4
    UniProt: Q7Z5N4

  • Chr Location
    7p22.2; chr7:3301252-4269000 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    786
  • Tissues
    31
  • cDNA Data
    10
  • Literature Summary
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000039683 Ensembl Gene Model | MGI Sequence Detail 974097 C57BL/6J ±  kb
transcript ENSMUST00000085774 Ensembl | MGI Sequence Detail 10352 Not Applicable  
polypeptide ENSMUSP00000082928 Ensembl | MGI Sequence Detail 2193 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 10
    Primer pair 2
    Other 2

    Microarray probesets 3
References
more
  • Summaries
    All 38
    Developmental Gene Expression 6
    Gene Ontology 4
    Phenotypes 11
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory