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Pcdha2 Gene Detail
Summary
  • Symbol
    Pcdha2
  • Name
    protocadherin alpha 2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2681880
    NCBI Gene: 353234
  • Member of
    Pcdha cluster
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:37072258-37320710 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 19.46 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    6689 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2681880
 protein coding gene Chr18:37072258-37320714 (+)
129S1/SvImJ MGP_129S1SvImJ_G0024295
 protein coding gene Chr18:35347489-35583235 (+)
A/J MGP_AJ_G0024261
 protein coding gene Chr18:34115304-34357515 (+)
AKR/J MGP_AKRJ_G0024229
 protein coding gene Chr18:35086194-35313391 (+)
BALB/cJ MGP_BALBcJ_G0024261
 protein coding gene Chr18:34158375-34406362 (+)
C3H/HeJ MGP_C3HHeJ_G0024028
 protein coding gene Chr18:35133698-35358175 (+)
C57BL/6NJ MGP_C57BL6NJ_G0024702
 protein coding gene Chr18:36597649-36867648 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0022142
 protein coding gene Chr18:34210288-34436126 (+)
CAST/EiJ MGP_CASTEiJ_G0023503
 protein coding gene Chr18:35130573-35356123 (+)
CBA/J MGP_CBAJ_G0023996
 protein coding gene Chr18:37676485-37945878 (+)
DBA/2J MGP_DBA2J_G0024128
 protein coding gene Chr18:33730035-33963728 (+)
FVB/NJ MGP_FVBNJ_G0024095
 protein coding gene Chr18:33444011-33689539 (+)
LP/J MGP_LPJ_G0024210
 protein coding gene Chr18:35401592-35676922 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0024123
 protein coding gene Chr18:38926388-39218915 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0024751
 protein coding gene Chr18:34938749-35180644 (+)
PWK/PhJ MGP_PWKPhJ_G0023247
 protein coding gene Chr18:33971295-34203479 (+)
SPRET/EiJ MGP_SPRETEiJ_G0023055
 protein coding gene Chr18:35215369-35441752 (+)
WSB/EiJ MGP_WSBEiJ_G0023566
 protein coding gene Chr18:34848332-35081773 (+)



Homology
more
  • Human Ortholog
    PCDHA2, protocadherin alpha 2
  • Vertebrate Orthologs
    15
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PCDHA2, protocadherin alpha 2
  • Synonyms
    PCDH-ALPHA2
  • Links
    NCBI Gene ID: 56146
    neXtProt AC: NX_Q9Y5H9
    UniProt: Q9Y5H9

  • Chr Location
    5q31.3; chr5:140794852-141012347 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    726
  • Tissues
    6
  • cDNA Data
    6
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000104148 Ensembl Gene Model | MGI Sequence Detail 248453 C57BL/6J ±  kb
    transcript ENSMUST00000115662 Ensembl | MGI Sequence Detail 5361 Not Applicable  
    polypeptide ENSMUSP00000111326 Ensembl | MGI Sequence Detail 948 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      4 Sequences
    • InterPro Domains
      IPR020894 Cadherin conserved site
      IPR031904 Cadherin, C-terminal catenin-binding domain
      IPR002126 Cadherin-like
      IPR015919 Cadherin-like superfamily
      IPR013164 Cadherin, N-terminal
      IPR050174 Protocadherin/Cadherin-related Cell Adhesion
    • GlyGen
      Q91Y17 1 site, 1 N-linked glycan (1 site)
    Molecular
    Reagents
    less
    • All nucleic 10
      cDNA 6
      Primer pair 4
    References
    more
    • Summaries
      All 28
      Developmental Gene Expression 6
      Gene Ontology 3
      Phenotypes 9
    • Earliest
      J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    10/22/2024
    MGI 6.24     		The Jackson Laboratory