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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4827006
Gene symbol: Otx1
Gene name: orthodenticle homeobox 1
Probe: MGC clone 73430
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_004727_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_01
TS23: conjunctival sac Moderate Regionally restricted euxassay_004727_01
TS23: neural retina Moderate Regionally restricted euxassay_004727_01
Specimen euxassay_004727_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_02
TS23: neural retina Moderate Regionally restricted euxassay_004727_02
TS23: conjunctival sac Moderate Regionally restricted euxassay_004727_02
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_02
Specimen euxassay_004727_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_03
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_004727_03
TS23: conjunctival sac Moderate Regionally restricted euxassay_004727_03
TS23: neural retina Moderate Regionally restricted euxassay_004727_03
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_03
Specimen euxassay_004727_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_04
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_004727_04
TS23: neural retina Moderate Regionally restricted euxassay_004727_04
TS23: conjunctival sac Moderate Regionally restricted euxassay_004727_04
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_04
Specimen euxassay_004727_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_05
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_004727_05
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_004727_05
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_05
Specimen euxassay_004727_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_06
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_004727_06
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_004727_06
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_004727_06
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_004727_06
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_06
Specimen euxassay_004727_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_07
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_004727_07
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_004727_07
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_004727_07
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_004727_07
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_07
Specimen euxassay_004727_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_08
TS23: spinal cord Moderate Regionally restricted euxassay_004727_08
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_004727_08
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_004727_08
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_08
Specimen euxassay_004727_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_09
TS23: spinal cord Moderate Regionally restricted euxassay_004727_09
TS23: pharynx epithelium Moderate Regionally restricted euxassay_004727_09
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_09
TS23: naris Moderate Regionally restricted euxassay_004727_09
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004727_09
TS23: oral epithelium Moderate Regionally restricted euxassay_004727_09
Specimen euxassay_004727_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_10
TS23: spinal cord Moderate Regionally restricted euxassay_004727_10
TS23: pharynx epithelium Moderate Regionally restricted euxassay_004727_10
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004727_10
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_004727_10
TS23: naris Moderate Regionally restricted euxassay_004727_10
TS23: oral epithelium Moderate Regionally restricted euxassay_004727_10
Specimen euxassay_004727_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_11
TS23: spinal cord Moderate Regionally restricted euxassay_004727_11
TS23: pharynx epithelium Moderate Regionally restricted euxassay_004727_11
TS23: naris Moderate Regionally restricted euxassay_004727_11
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_004727_11
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004727_11
TS23: oral epithelium Moderate Regionally restricted euxassay_004727_11
Specimen euxassay_004727_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_12
TS23: spinal cord Moderate Regionally restricted euxassay_004727_12
TS23: pharynx epithelium Moderate Regionally restricted euxassay_004727_12
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_004727_12
TS23: oral epithelium Moderate Regionally restricted euxassay_004727_12
Specimen euxassay_004727_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_13
TS23: spinal cord Moderate Regionally restricted euxassay_004727_13
TS23: pharynx epithelium Moderate Regionally restricted euxassay_004727_13
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_004727_13
TS23: oral epithelium Moderate Regionally restricted euxassay_004727_13
Specimen euxassay_004727_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_14
TS23: spinal cord Moderate Regionally restricted euxassay_004727_14
TS23: naris Moderate Regionally restricted euxassay_004727_14
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004727_14
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_004727_14
TS23: oral epithelium Moderate Regionally restricted euxassay_004727_14
Specimen euxassay_004727_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_15
TS23: spinal cord Moderate Regionally restricted euxassay_004727_15
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_004727_15
TS23: naris Moderate Regionally restricted euxassay_004727_15
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004727_15
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_004727_15
TS23: oral epithelium Moderate Regionally restricted euxassay_004727_15
TS23: lower jaw incisor Moderate Regionally restricted euxassay_004727_15
Specimen euxassay_004727_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_16
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_004727_16
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_16
TS23: naris Moderate Regionally restricted euxassay_004727_16
TS23: nasal cavity respiratory epithelium Moderate Regionally restricted euxassay_004727_16
Specimen euxassay_004727_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_17
TS23: dorsal root ganglion Moderate Regionally restricted euxassay_004727_17
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_004727_17
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004727_17
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_17
Specimen euxassay_004727_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_18
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_004727_18
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_004727_18
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_004727_18
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_18
TS23: olfactory epithelium Moderate Regionally restricted euxassay_004727_18
Specimen euxassay_004727_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_19
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_004727_19
TS23: vestibulo-cochlear ganglion Moderate Regionally restricted euxassay_004727_19
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_19
Specimen euxassay_004727_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_20
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_004727_20
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_20
Specimen euxassay_004727_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_21
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_004727_21
TS23: naso-lacrimal duct Moderate Regionally restricted euxassay_004727_21
TS23: conjunctival sac Moderate Regionally restricted euxassay_004727_21
Specimen euxassay_004727_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_22
TS23: conjunctival sac Moderate Regionally restricted euxassay_004727_22
TS23: neural retina Moderate Regionally restricted euxassay_004727_22
Specimen euxassay_004727_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: brain Moderate Regionally restricted euxassay_004727_23
TS23: conjunctival sac Moderate Regionally restricted euxassay_004727_23
TS23: neural retina Moderate Regionally restricted euxassay_004727_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
10/09/2024
MGI 6.24 		The Jackson Laboratory