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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828208
Gene symbol: Slc36a1
Gene name: solute carrier family 36 (proton/amino acid symporter), member 1
Probe: T56009
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_019688_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_019688_04
Specimen euxassay_019688_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019688_05
TS23: facial ganglion Weak Regionally restricted euxassay_019688_05
TS23: mandible Weak Regionally restricted euxassay_019688_05
TS23: rib Weak Regionally restricted euxassay_019688_05
Specimen euxassay_019688_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019688_06
TS23: mandible Weak Regionally restricted euxassay_019688_06
TS23: rib Weak Regionally restricted euxassay_019688_06
Specimen euxassay_019688_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: mandible Weak Regionally restricted euxassay_019688_07
TS23: rib Weak Regionally restricted euxassay_019688_07
Specimen euxassay_019688_08: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019688_08
TS23: pons mantle layer Weak Regionally restricted euxassay_019688_08 trigeminal motor nucleus
TS23: maxilla Weak Regionally restricted euxassay_019688_08
TS23: mandible Weak Regionally restricted euxassay_019688_08
TS23: rib Weak Regionally restricted euxassay_019688_08
Specimen euxassay_019688_09: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019688_09
TS23: glossopharyngeal ganglion Weak Regionally restricted euxassay_019688_09
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_019688_09 facial motor nucleus
TS23: pancreas Weak Regionally restricted euxassay_019688_09
TS23: maxilla Weak Regionally restricted euxassay_019688_09
TS23: mandible Weak Regionally restricted euxassay_019688_09
TS23: rib Weak Regionally restricted euxassay_019688_09
Specimen euxassay_019688_10: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Regionally restricted euxassay_019688_10
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_019688_10 facial motor nucleus
TS23: cervical ganglion Moderate Regionally restricted euxassay_019688_10
TS23: pancreas Weak Regionally restricted euxassay_019688_10
Specimen euxassay_019688_11: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_019688_11 facial motor nucleus
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_019688_11
TS23: pancreas Weak Regionally restricted euxassay_019688_11
Specimen euxassay_019688_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Weak Regionally restricted euxassay_019688_12
TS23: thyroid gland Weak Regionally restricted euxassay_019688_12
TS23: ventral grey horn Weak Regionally restricted euxassay_019688_12
Specimen euxassay_019688_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Weak Regionally restricted euxassay_019688_13
TS23: urethra Weak Regionally restricted euxassay_019688_13 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: rectum Weak Regionally restricted euxassay_019688_13
TS23: thymus primordium Weak Regionally restricted euxassay_019688_13
TS23: ventral grey horn Weak Regionally restricted euxassay_019688_13
Specimen euxassay_019688_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Weak Regionally restricted euxassay_019688_14
TS23: urethra Weak Regionally restricted euxassay_019688_14 Originally this result was annotated to a male-specific term, but as the specimen was not sexed, it is likely the data annotator intended to use a non-gender specific term.
TS23: thymus primordium Weak Regionally restricted euxassay_019688_14
TS23: ventral grey horn Weak Regionally restricted euxassay_019688_14
Specimen euxassay_019688_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thoracic ganglion Moderate Regionally restricted euxassay_019688_15
TS23: thymus primordium Weak Regionally restricted euxassay_019688_15
Specimen euxassay_019688_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: thymus primordium Weak Regionally restricted euxassay_019688_16
TS23: ventral grey horn Weak Regionally restricted euxassay_019688_16
Specimen euxassay_019688_17: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_019688_17 facial motor nucleus
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_019688_17
TS23: thymus primordium Weak Regionally restricted euxassay_019688_17
TS23: thyroid gland Weak Regionally restricted euxassay_019688_17
TS23: maxilla Weak Regionally restricted euxassay_019688_17
TS23: mandible Weak Regionally restricted euxassay_019688_17
TS23: ventral grey horn Moderate Regionally restricted euxassay_019688_17
Specimen euxassay_019688_18: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: medulla oblongata basal plate mantle layer Weak Regionally restricted euxassay_019688_18 facial motor nucleus
TS23: cervical ganglion Moderate Regionally restricted euxassay_019688_18
TS23: cervico-thoracic ganglion Moderate Regionally restricted euxassay_019688_18
TS23: maxilla Weak Regionally restricted euxassay_019688_18
TS23: mandible Weak Regionally restricted euxassay_019688_18
Specimen euxassay_019688_19: embryonic day 14.5 (more )
Note: Additional information for this specimen was included in the Eurexpress data submission file.
Structure Level Pattern Image Note
TS23: vagus ganglion Moderate Regionally restricted euxassay_019688_19
TS23: pons mantle layer Weak Regionally restricted euxassay_019688_19 trigeminal motor nucleus
TS23: mandible Weak Regionally restricted euxassay_019688_19
TS23: maxilla Weak Regionally restricted euxassay_019688_19
Specimen euxassay_019688_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_019688_20
TS23: mandible Weak Regionally restricted euxassay_019688_20
Specimen euxassay_019688_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: glossopharyngeal ganglion Moderate Regionally restricted euxassay_019688_21
TS23: trigeminal ganglion Moderate Regionally restricted euxassay_019688_21
TS23: maxilla Weak Regionally restricted euxassay_019688_21
TS23: mandible Weak Regionally restricted euxassay_019688_21
TS23: rib Weak Regionally restricted euxassay_019688_21
Specimen euxassay_019688_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019688_22
TS23: mandible Weak Regionally restricted euxassay_019688_22
TS23: maxilla Weak Regionally restricted euxassay_019688_22
TS23: rib Weak Regionally restricted euxassay_019688_22
Specimen euxassay_019688_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: trigeminal ganglion Weak Regionally restricted euxassay_019688_23
TS23: mandible Weak Regionally restricted euxassay_019688_23
TS23: rib Weak Regionally restricted euxassay_019688_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
06/12/2024
MGI 6.13 		The Jackson Laboratory