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Gene Expression Data
Assay Details
Assay
Reference: J:127119 Visel A, et al., Regulatory pathway analysis by high-throughput in situ hybridization. PLoS Genet. 2007 Oct 19;3(10):1867-83
Assay type: RNA in situ
MGI Accession ID: MGI:3767167
Gene symbol: Trim9
Gene name: tripartite motif-containing 9
Probe: ST85 probe 14
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 5 Trim9: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: tongue Absent 5_Trim9
TS22: face Absent 5_Trim9 Expression was absent in Face/Soft Tissues.
TS22: tail Weak Regionally restricted 5_Trim9
TS22: forelimb Weak Regionally restricted 5_Trim9
TS22: hindlimb Weak Regionally restricted 5_Trim9
TS22: genital tubercle Absent 5_Trim9
TS22: skin Absent 5_Trim9
TS22: lung Absent 5_Trim9
TS22: metanephros Absent 5_Trim9
TS22: salivary gland Absent 5_Trim9
TS22: tooth Present Regionally restricted 5_Trim9
TS22: vibrissa follicle Absent 5_Trim9
TS22: esophagus Weak Regionally restricted 5_Trim9
TS22: stomach Absent 5_Trim9
TS22: intestine Absent 5_Trim9
TS22: cochlea Weak Regionally restricted 5_Trim9
TS22: inner ear labyrinth Weak Regionally restricted 5_Trim9
TS22: olfactory epithelium Present Regionally restricted 5_Trim9
TS22: retina Present Regionally restricted 5_Trim9
TS22: basal forebrain Weak Regionally restricted 5_Trim9
TS22: piriform cortex Present Regionally restricted 5_Trim9
TS22: amygdala Present Regionally restricted 5_Trim9
TS22: pretectum Present Regionally restricted 5_Trim9
TS22: dorsal root ganglion Present Regionally restricted 5_Trim9
TS22: cranial ganglion Weak Regionally restricted 5_Trim9
TS22: corpus striatum Present Regionally restricted 5_Trim9
TS22: pallidum Strong Regionally restricted 5_Trim9
TS22: midbrain tegmentum Strong Regionally restricted 5_Trim9
TS22: spinal cord Strong Regionally restricted 5_Trim9
TS22: pons Strong Regionally restricted 5_Trim9
TS22: medulla oblongata Strong Regionally restricted 5_Trim9
TS22: telencephalon septum Present Regionally restricted 5_Trim9
TS22: thalamus Strong Regionally restricted 5_Trim9
TS22: hypothalamus Strong Regionally restricted 5_Trim9
TS22: cerebellum Present Regionally restricted 5_Trim9
TS22: superior colliculus Strong Regionally restricted 5_Trim9
TS22: inferior colliculus Present Regionally restricted 5_Trim9
TS22: main olfactory bulb Weak Regionally restricted 5_Trim9
TS22: neocortex Strong Regionally restricted 5_Trim9
TS22: hippocampus Present Regionally restricted 5_Trim9
TS22: ureter Present Regionally restricted 5_Trim9
TS22: bladder Absent 5_Trim9
TS22: urethra Absent 5_Trim9
TS22: main bronchus Absent 5_Trim9
TS22: trachea Absent 5_Trim9
TS22: palatal shelf Present Regionally restricted 5_Trim9
TS22: middle ear Absent 5_Trim9
TS22: pharynx Absent 5_Trim9
TS22: larynx Absent 5_Trim9
TS22: optic nerve Absent 5_Trim9
TS22: liver Absent 5_Trim9
TS22: thymus primordium Absent 5_Trim9
TS22: thyroid gland Weak Regionally restricted 5_Trim9
TS22: pituitary gland Weak Regionally restricted 5_Trim9
TS22: pancreas Weak Regionally restricted 5_Trim9
TS22: spleen primordium Absent 5_Trim9 Expression was absent in Spleen.
TS22: adrenal gland Absent 5_Trim9
TS22: gonad Absent 5_Trim9
TS22: musculature Absent 5_Trim9 Expression was absent in Muscle System.
TS22: choroid plexus Absent 5_Trim9
TS22: meninges Absent 5_Trim9
TS22: blood vessel Absent 5_Trim9
TS22: heart atrium Absent 5_Trim9
TS22: heart ventricle Absent 5_Trim9
TS22: appendicular skeleton Weak Regionally restricted 5_Trim9
TS22: axial skeleton Absent 5_Trim9
TS22: cranium Absent 5_Trim9
TS22: facial bone primordium Absent 5_Trim9
TS22: lens Absent 5_Trim9

Specimen 7AA: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex ventricular layer Present Regionally restricted 7AA Expression was detected in a subset of cells in the ventricular zone.
TS22: cerebral cortex marginal layer Present 7AA

Specimen 8G1: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex subventricular zone Present 8G1

Specimen 8G2: embryonic day 15.5; Pax6Sey/Pax6Sey (more )
Structure Level Pattern Image Note
TS23: cerebral cortex subventricular zone Absent 8G2


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
11/19/2024
MGI 6.24
The Jackson Laboratory