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Gene Expression Data
Assay Details
Assay
Reference: J:127438 Berti C, et al., TRIM9 is specifically expressed in the embryonic and adult nervous system. Mech Dev. 2002 May;113(2):159-62
Assay type: RNA in situ
MGI Accession ID: MGI:3778939
Gene symbol: Trim9
Gene name: tripartite motif-containing 9
Probe: Trim9 probe
Probe preparation: Antisense RNA
Results
Specimen Not shown: embryonic day 8.5 (more )
Structure Level Pattern Image Note
TS13: embryo Absent

Specimen 1A: embryonic day 9.5 (more )
Structure Level Pattern Image Note
TS15: central nervous system Present Regionally restricted 1A Expression is present in the ventral part of the entire neuroepithelium.
TS15: dorsal root ganglion Present 1A

Specimen 1B: embryonic day 11.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS20: central nervous system Present Regionally restricted 1B Expression is present in the ventral part of the entire neuroepithelium.
TS20: dorsal root ganglion Present 1B
TS20: telencephalon Present Regionally restricted 1B Expression is present in the caudal and medial part.

Specimen 1C: embryonic day 13.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS22: thalamus Strong Regionally restricted 1C Expression is present in the dorsal thalamus.
TS22: hindbrain Strong 1C
TS22: midbrain Strong 1C
TS22: spinal cord Strong 1C
TS22: cortical plate Present Regionally restricted 1C Expression is present in a small differentiating zone above the ventricular neuroepithelium, the primordial plexiform layer.
TS22: hippocampus Present 1C Expression is present in the differentiating field and in the area of the fimbria.

Specimen 1D: embryonic day 15.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS23: thalamus Strong Regionally restricted 1D Expression is present in the dorsal thalamus.
TS23: hindbrain Strong 1D
TS23: midbrain Strong 1D
TS23: spinal cord Strong 1D
TS23: cerebral cortex subventricular zone Present 1D
TS23: cortical plate Present 1D
TS23: cerebral cortex intermediate zone Absent 1D
TS23: cerebral cortex ventricular layer Absent 1D
TS23: hippocampus Present 1D Expression is present in the differentiating field and in the area of the fimbria hippocampi.

Specimen 2A: embryonic day 13.5 (more )
Note: This is a transversal section.
Structure Level Pattern Image Note
TS22: cerebellum Present 2A
TS22: medulla oblongata Present 2A
TS22: pons Present 2A
TS22: thalamus Present 2A
TS22: cortical plate Present Regionally restricted 2A Expression is present in a small differentiating zone above the ventricular neuroepithelium, the primordial plexiform layer.

Specimen 2B: embryonic day 13.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS22: cortical plate Present Regionally restricted 2B Expression is present in a small differentiating zone above the ventricular neuroepithelium, the primordial plexiform layer.
TS22: thalamus Present Regionally restricted 2B Expression is present in the dorsal thalamus.
TS22: hippocampus Present 2B Expression is present in the fimbria hippocampi.

Specimen 2C: embryonic day 15.5 (more )
Note: This is a transversal section. Figs. 2E and 2F are higher magnification images of the section in Fig. 2C.
Structure Level Pattern Image Note
TS23: medulla oblongata Present 2C
TS23: pons Present 2C
TS23: telencephalon Present 2C
TS23: thalamus Present 2C
TS23: cerebellum Present Diffuse 2C There is a diffused signal in the primorida of the cerebellum.
TS23: cerebral cortex subventricular zone Present 2C , 2E , 2F Expression is present in the lateral (2E) and frontal (2F) region.
TS23: cortical plate Present 2C , 2E , 2F Expression is present in the lateral (2E) and frontal (2F) region.
TS23: cerebral cortex intermediate zone Absent 2F , 2E , 2C
TS23: cerebral cortex ventricular layer Absent 2F , 2E , 2C
TS23: hippocampus Present 2E , 2C Expression is present in the differentiating field.
TS23: diencephalon ventricular layer Strong 2C Expression is observed in the ventricular layer surrounding the third ventricle.

Specimen 2D: embryonic day 15.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS23: cerebral cortex Present 2D
TS23: hippocampus Present 2D Expression is present in the fimbria hippocampi.
TS23: thalamus Strong Regionally restricted 2D Expression is present in the dorsal thalamus.

Specimen 3A/C: embryonic day 13.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS22: tectum Present Regionally restricted 3A Expression is present in the external layers.
TS22: midbrain tegmentum Present Diffuse 3A
TS22: cerebellum Present Diffuse 3A There is a diffused signal in the primorida of the cerebellum.
TS22: medulla oblongata ventricular layer Present 3C Expression is particularly strong in the medial part.
TS22: pons ventricular layer Present 3C Expression is particularly strong in the medial part.

Specimen 3B/D: embryonic day 15.5 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS23: tectum Present Regionally restricted 3B Expression is present in the external layers.
TS23: midbrain tegmentum Present Regionally restricted 3B Expression is restricted to the ventricular layer lining the aqueduct.
TS23: medulla oblongata ventricular layer Present 3D Expression is particularly strong in the medial part.
TS23: pons ventricular layer Present 3D Expression is particularly strong in the medial part.

Specimen 3E: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS22: spinal cord ventricular layer Strong Regionally restricted 3E Expression is basal; it is higher ventrally and lower dorsally.
TS22: spinal cord floor plate Strong 3E

Specimen 3F: embryonic day 15.5 (more )
Structure Level Pattern Image Note
TS23: spinal cord ventricular layer Strong Regionally restricted 3F Expression is basal; it is higher ventrally and lower dorsally.
TS23: spinal cord floor plate Strong 3F
TS23: dorsal root ganglion Present 3F

Specimen 3G: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS20: dorsal root ganglion Present 3G

Specimen 3H: embryonic day 13.5 (more )
Structure Level Pattern Image Note
TS22: dorsal root ganglion Present 3H

Specimen 4A: postnatal day 21 (more )
Note: This is a sagittal section.
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Strong 4A

Specimen 4B: postnatal day 21 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Strong 4B

Specimen 5C: postnatal adult (more )
Structure Level Pattern Image Note
TS28: hippocampus pyramidal cell layer Present 5C

Specimen 5D: postnatal adult (more )
Structure Level Pattern Image Note
TS28: entorhinal cortex Present 5D
TS28: piriform cortex Present 5D


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
11/19/2024
MGI 6.24
The Jackson Laboratory