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Gene Expression Data
Assay Details
Assay
Reference: J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Assay type: RNA in situ
MGI Accession ID: MGI:4828921
Gene symbol: Trim9
Gene name: tripartite motif-containing 9
Probe: T30552
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure.
Results
Specimen euxassay_010509_01: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_01
Specimen euxassay_010509_02: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_02
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_010509_02
Specimen euxassay_010509_03: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_03
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_03
Specimen euxassay_010509_04: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_04
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_04
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_04
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_04
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_04
Specimen euxassay_010509_05: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_05
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_05
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_05
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_05
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_05
Specimen euxassay_010509_06: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_06
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_06
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_06
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_06
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_06
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010509_06
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010509_06
Specimen euxassay_010509_07: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_07
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_07
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010509_07
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_07
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010509_07
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010509_07
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010509_07
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_07
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_07
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010509_07
Specimen euxassay_010509_08: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010509_08
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_08
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_08
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010509_08
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_08
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010509_08
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010509_08
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_08
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_08
TS23: pons ventricular layer Strong Regionally restricted euxassay_010509_08
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010509_08
TS23: upper jaw molar Moderate Regionally restricted euxassay_010509_08
TS23: lower jaw molar Moderate Regionally restricted euxassay_010509_08
Specimen euxassay_010509_09: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010509_09
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_09
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_09
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_09
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010509_09
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010509_09
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010509_09
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_09
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_09
TS23: pons ventricular layer Strong Regionally restricted euxassay_010509_09
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010509_09
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010509_09
Specimen euxassay_010509_10: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010509_10
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_10
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_10
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010509_10
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_10
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010509_10
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010509_10
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_10
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_10
TS23: pons ventricular layer Strong Regionally restricted euxassay_010509_10
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010509_10
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010509_10
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_010509_10
Specimen euxassay_010509_11: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010509_11
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_11
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_11
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010509_11
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_11
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010509_11
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010509_11
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_11
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_11
TS23: pons ventricular layer Strong Regionally restricted euxassay_010509_11
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010509_11
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010509_11
TS23: spinal cord ventricular layer Strong Regionally restricted euxassay_010509_11
Specimen euxassay_010509_12: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_12
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_12
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010509_12
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010509_12
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_12
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010509_12
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010509_12
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_12
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_12
TS23: pons ventricular layer Strong Regionally restricted euxassay_010509_12
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010509_12
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010509_12
Specimen euxassay_010509_13: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010509_13
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_13
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_13
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_010509_13
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010509_13
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010509_13
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_13
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_13
TS23: pons ventricular layer Strong Regionally restricted euxassay_010509_13
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010509_13
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010509_13
Specimen euxassay_010509_14: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010509_14
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_14
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_14
TS23: thalamus mantle layer Moderate Regionally restricted euxassay_010509_14
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010509_14
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010509_14
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_14
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_14
TS23: pons ventricular layer Strong Regionally restricted euxassay_010509_14
TS23: medulla oblongata basal plate ventricular layer Strong Regionally restricted euxassay_010509_14
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010509_14
Specimen euxassay_010509_15: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010509_15
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_15
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_15
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_010509_15
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010509_15
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010509_15
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010509_15
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_15
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_15
TS23: pons ventricular layer Strong Regionally restricted euxassay_010509_15
TS23: spinal cord mantle layer Moderate Regionally restricted euxassay_010509_15
Specimen euxassay_010509_16: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010509_16
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_16
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_16
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010509_16
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_010509_16
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010509_16
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010509_16
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_16
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_16
Specimen euxassay_010509_17: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010509_17
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_17
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_17
TS23: thalamus mantle layer Moderate Regionally restricted euxassay_010509_17
TS23: cerebral cortex mantle layer Moderate Regionally restricted euxassay_010509_17
TS23: medulla oblongata alar plate mantle layer Moderate Regionally restricted euxassay_010509_17
TS23: medulla oblongata basal plate mantle layer Moderate Regionally restricted euxassay_010509_17
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_17
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_17
Specimen euxassay_010509_18: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: diencephalon lateral wall mantle layer Moderate Regionally restricted euxassay_010509_18
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_18
TS23: midbrain mantle layer Moderate Regionally restricted euxassay_010509_18
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_18
TS23: thalamus mantle layer Strong Regionally restricted euxassay_010509_18
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_18
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_18
Specimen euxassay_010509_19: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_19
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_19
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_19
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_19
TS23: upper jaw molar Moderate Regionally restricted euxassay_010509_19
TS23: lower jaw molar Moderate Regionally restricted euxassay_010509_19
Specimen euxassay_010509_20: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_20
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_20
TS23: rest of cerebellum mantle layer Moderate Regionally restricted euxassay_010509_20
TS23: pons mantle layer Moderate Regionally restricted euxassay_010509_20
Specimen euxassay_010509_21: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_21
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_21
Specimen euxassay_010509_22: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_22
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_22
Specimen euxassay_010509_23: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS23: cerebral cortex mantle layer Strong Regionally restricted euxassay_010509_23
TS23: telencephalon mantle layer Moderate Regionally restricted euxassay_010509_23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory