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Gene Expression Data
Assay Details
Assay
Reference: J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
Assay type: RNA in situ
MGI Accession ID: MGI:5421719
Gene symbol: Trim9
Gene name: tripartite motif-containing 9
Probe: ST85 probe 14
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Assay notes: Cryosections of fresh frozen material were fixed in 4% paraformaldehyde for 20 min. before further processing. A tyramide-biotin/streptavidin amplification step was included in the in situ hybridization procedure. These data were downloaded from GenePaint.org on 1/30/12.
Results
Specimen ST85; Specimen C1619: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: nervous system Strong Regionally restricted Embryo_C1619_3_4C
TS22: central nervous system Strong Regionally restricted Embryo_C1619_3_4C
TS22: telencephalon Strong Regionally restricted Embryo_C1619_3_4C
TS22: cerebral cortex Strong Regionally restricted Embryo_C1619_3_4C
TS22: neocortex Strong Regionally restricted Embryo_C1619_3_4C
TS22: olfactory cortex Moderate Regionally restricted Embryo_C1619_3_1C
TS22: main olfactory bulb Weak Regionally restricted Embryo_C1619_3_3A
TS22: piriform cortex Moderate Regionally restricted Embryo_C1619_3_1C
TS22: hippocampus Moderate Regionally restricted Embryo_C1619_3_1D
TS22: basal ganglia Strong Regionally restricted Embryo_C1619_3_3B
TS22: corpus striatum Moderate Regionally restricted Embryo_C1619_3_1C Expression was detected in the corpus striatum (lateral ganglionic eminence).
TS22: basal forebrain Weak Regionally restricted Embryo_C1619_3_2D
TS22: amygdala Moderate Regionally restricted Embryo_C1619_3_2A
TS22: telencephalon septum Moderate Regionally restricted Embryo_C1619_3_4B
TS22: pallidum Strong Regionally restricted Embryo_C1619_3_3B Expression was strong in the pallidum (medial ganglionic eminence).
TS22: diencephalon Strong Regionally restricted Embryo_C1619_3_3A
TS22: thalamus Strong Regionally restricted Embryo_C1619_3_3A
TS22: hypothalamus Strong Regionally restricted Embryo_C1619_3_4B
TS22: midbrain Strong Regionally restricted Embryo_C1619_3_3C
TS22: pretectum Moderate Regionally restricted Embryo_C1619_3_3C
TS22: superior colliculus Strong Regionally restricted Embryo_C1619_3_3C
TS22: inferior colliculus Moderate Regionally restricted Embryo_C1619_3_3C
TS22: midbrain tegmentum Strong Regionally restricted Embryo_C1619_3_3A
TS22: hindbrain Strong Regionally restricted Embryo_C1619_3_4A
TS22: cerebellum Moderate Regionally restricted Embryo_C1619_3_2C
TS22: pons Strong Regionally restricted Embryo_C1619_3_3C
TS22: medulla oblongata Strong Regionally restricted Embryo_C1619_3_4A
TS22: spinal cord Strong Regionally restricted Embryo_C1619_3_4A
TS22: choroid plexus Absent
TS22: meninges Absent
TS22: peripheral nervous system Moderate Regionally restricted Embryo_C1619_3_3A
TS22: cranial ganglion Weak Regionally restricted Embryo_C1619_3_2C
TS22: dorsal root ganglion Moderate Regionally restricted Embryo_C1619_3_3A
TS22: eye Moderate Regionally restricted Embryo_C1619_3_1A
TS22: retina Moderate Regionally restricted Embryo_C1619_3_1A
TS22: lens Absent
TS22: optic nerve Absent
TS22: nose Moderate Regionally restricted Embryo_C1619_3_3C
TS22: olfactory epithelium Moderate Regionally restricted Embryo_C1619_3_3C
TS22: ear Weak Regionally restricted Embryo_C1619_3_2C
TS22: inner ear Weak Regionally restricted Embryo_C1619_3_2C
TS22: cochlea Weak Regionally restricted Embryo_C1619_3_2C
TS22: inner ear labyrinth Weak Regionally restricted Embryo_C1619_3_1B
TS22: middle ear Absent
TS22: alimentary system Moderate Regionally restricted Embryo_C1619_3_4C Expression was detected in the digestive system.
TS22: intestine Absent
TS22: salivary gland Absent
TS22: tongue Absent
TS22: tooth Moderate Regionally restricted Embryo_C1619_3_5C
TS22: palatal shelf Moderate Regionally restricted Embryo_C1619_3_4C
TS22: esophagus Weak Regionally restricted Embryo_C1619_3_4B
TS22: stomach Absent
TS22: liver Absent
TS22: respiratory system Absent
TS22: pharynx Absent
TS22: larynx Absent
TS22: trachea Absent
TS22: main bronchus Absent
TS22: lung Absent
TS22: urinary system Moderate Regionally restricted Embryo_C1619_3_4A Expression was detected in the genito-urinary system.
TS22: metanephros Absent
TS22: ureter Moderate Regionally restricted Embryo_C1619_3_4A
TS22: bladder Absent
TS22: urethra Absent
TS22: reproductive system Absent
TS22: genital tubercle Absent
TS22: gonad Absent
TS22: gland Weak Regionally restricted Embryo_C1619_3_3B Expression was weak in the endocrine system.
TS22: thyroid gland Weak Regionally restricted Embryo_C1619_3_3B
TS22: pituitary gland Weak Regionally restricted Embryo_C1619_3_3C
TS22: pancreas Weak Regionally restricted Embryo_C1619_3_5A
TS22: adrenal gland Absent
TS22: cardiovascular system Absent
TS22: heart Absent
TS22: heart atrium Absent
TS22: heart ventricle Absent
TS22: blood vessel Absent
TS22: hemolymphoid system Absent Expression was not detected in the immune system.
TS22: spleen primordium Absent
TS22: thymus primordium Absent
TS22: appendicular skeleton Weak Regionally restricted Embryo_C1619_3_1D Expression was weak in the skeleton (limbs, shoulder, hip).
TS22: musculature Absent
TS22: face Absent Expression was not detected in the face/soft tissues.
TS22: facial bone primordium Absent
TS22: cranium Absent Expression was not detected in the skull (base and vault).
TS22: axial skeleton Absent
TS22: tail Weak Regionally restricted Embryo_C1619_3_3D
TS22: forelimb Weak Regionally restricted Embryo_C1619_3_1C
TS22: hindlimb Weak Regionally restricted Embryo_C1619_3_1C
TS22: integumental system Absent
TS22: skin Absent
TS22: hair Absent
TS22: vibrissa follicle Absent Expression was not detected in whisker follicle.
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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11/19/2024
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