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Gene Expression Data
Assay Details
Assay
Reference: J:190428 Escamez T, et al., Developmental dynamics of PAFAH1B subunits during mouse brain development. J Comp Neurol. 2012 Dec 1;520(17):3877-94
Assay type: RNA in situ
MGI Accession ID: MGI:5521340
Gene symbol: Pafah1b1
Gene name: platelet-activating factor acetylhydrolase, isoform 1b, subunit 1
Probe: Lis1 cDNA1
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 2I: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: brain Present Regionally restricted 2I Expression is on the ventricular side of the entire anterior neural tube.
TS19: cerebellum primordium Present 2I

Specimen 2J: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: diencephalon Strong Regionally restricted 2J Expression is in the ventral hypothalamic primordium and the preoptic area.
TS19: brain Present Regionally restricted 2J Expression is on the ventricular side of the entire anterior neural tube.

Specimen 2K: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: telencephalon Present Regionally restricted 2K Expression is in the subventricular zone.
TS19: telencephalon ventricular layer Present 2K

Specimen 2L: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: telencephalon ventricular layer Present 2L

Specimen 2O,P: embryonic day 11.5 (more )
Structure Level Pattern Image Note
TS19: neural retinal epithelium Present Scattered 2P , 2O

Specimen 3I: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebellum ventricular layer Strong 3I
TS22: cerebral cortex subventricular zone Strong 3I
TS22: cerebral cortex ventricular layer Strong 3I
TS22: midbrain ventricular layer Strong 3I
TS22: midbrain lateral wall Strong Regionally restricted 3I Expression is in the subventricular zone.
TS22: inferior colliculus Strong Regionally restricted 3I Expression is in the mantle of the inferior colliculus.
TS22: cerebellum Strong Regionally restricted 3I Expression is at the pial surface.
TS22: thalamus Present Regionally restricted 3I Expression is in the caudal part.
TS22: cerebral cortex marginal layer Present 3I
TS22: cortical plate Present 3I
TS22: epithalamus Present 3I
TS22: pretectum Absent 3I

Specimen 3J: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon ventricular layer Present Uniform 3J
TS22: epithalamus Present 3J
TS22: hypothalamus Present Regionally restricted 3J Expression is in the infundibular and paraventricular region of the hypothalamus.
TS22: telencephalon Present Regionally restricted 3J Expression is in the preoptic area.
TS22: thalamus Present Regionally restricted 3J Expression is in the caudal part.
TS22: pretectum Absent 3J

Specimen 3K: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: cerebral cortex subventricular zone Strong 3K
TS22: cerebral cortex ventricular layer Strong 3K
TS22: cerebral cortex marginal layer Present 3K
TS22: cortical plate Present 3K

Specimen 3L: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: telencephalon ventricular layer Present Uniform 3L

Specimen 3O,P: embryonic day 14.5 (more )
Structure Level Pattern Image Note
TS22: eye Present 3P , 3O

Specimen 4I: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cerebral cortex intermediate zone Strong 4I Expression is stronger ventrally than dorsally.
TS25: hypothalamus Present 4I
TS25: telencephalon Present Regionally restricted 4I Expression is in the preoptic area.

Specimen 4J: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: thalamus Strong 4J
TS25: cerebellum Present 4J
TS25: hypothalamus Present 4J
TS25: oculomotor nerve Present 4J
TS25: telencephalon Present Regionally restricted 4J Expression is in the preoptic area.
TS25: midbrain lateral wall Present Regionally restricted 4J Expression is in the subventricular zone.
TS25: diencephalon Weak 4J Expression is in the prethalamus.

Specimen 4K: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cortical plate Strong 4K

Specimen 4L: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: cerebral cortex subventricular zone Present 4L
TS25: cerebral cortex ventricular zone Present 4L

Specimen 4O,P: embryonic day 17.5 (more )
Structure Level Pattern Image Note
TS25: retina Present Uniform 4O , 4P

Specimen 4S,T: embryonic day 17.5 (more )
Note: Double labeled: blue - Pafah1b1; brown - Tubb3 (Tuj1; assay MGI:5522516).
Structure Level Pattern Image Note
TS25: retina Present 4T , 4S Co-expression in migrating neurons.

Specimen 5P: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cortical layer VI Very strong 5P Expression is in a set of neurons localized in the deepest part of cortical layer 6.
TS28: main olfactory bulb Present Regionally restricted 5P Expression is in the rostral migratory stream and in the different layers.
TS28: rostral migratory stream Present Regionally restricted 5P Expression is in the rostral migratory stream and in the different layers.
TS28: facial nucleus Present 5P
TS28: inferior olivary nucleus Present 5P
TS28: locus coeruleus Present 5P
TS28: pontine nucleus Present 5P
TS28: claustrum Weak 5P
TS28: corpus striatum Weak 5P
TS28: main olfactory bulb glomerular layer Weak 5P
TS28: telencephalon septum Weak 5P

Specimen 5Q: postnatal day 77 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Strong 5Q
TS28: cerebellum internal granule cell layer Strong 5Q
TS28: cerebellum external granule cell layer Present 5Q
TS28: cerebellum molecular layer Present 5Q

Specimen 5R: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 5R
TS28: cerebellum granule cell layer Present 5R
TS28: cerebellum molecular layer Present 5R
TS28: deep cerebellar nucleus Present 5R

Specimen 5S: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cortical layer VI Very strong Regionally restricted 5S Expression is in a set of neurons localized in the deepest part of cortical layer 6.
TS28: cortical layer II Present 5S
TS28: cortical layer III Present 5S

Specimen 5T: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: neocortex layer Present 5T

Specimen 5U: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Strong 5U
TS28: cerebellum external granule cell layer Present 5U
TS28: cerebellum internal granule cell layer Present 5U
TS28: cerebellum molecular layer Present 5U

Specimen 5V: postnatal day 7 (more )
Note: Double labeled: blue - Pafah1b1; red - Calb1 (assay MGI:5522517).
Structure Level Pattern Image Note
TS28: epithalamus Present 5V
TS28: habenula Present 5V
TS28: hypothalamus Present 5V
TS28: mammillary body Present 5V
TS28: thalamus Present 5V
TS28: forebrain Present Regionally restricted 5V Expression is in the preoptic area.
TS28: midbrain Present Regionally restricted 5V Expression is in the precommisural region of the pretectum.

Specimen 5W: postnatal day 7 (more )
Structure Level Pattern Image Note
TS28: hippocampus CA2 Present 5W
TS28: hippocampus CA3 Present 5W
TS28: dentate gyrus Weak 5W
TS28: hippocampus CA1 Weak 5W

Specimen 5X: postnatal day 30 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Strong 5X


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory