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Gene Expression Data
Assay Details
Assay
Reference: J:154364 Beaubien F, et al., Differential expression of slitrk family members in the mouse nervous system. Dev Dyn. 2009 Nov 18;238(12):3285-3296
Assay type: RNA in situ
MGI Accession ID: MGI:5578588
Gene symbol: Slitrk5
Gene name: SLIT and NTRK-like family, member 5
Probe: MGC clone 86113
Probe preparation: Antisense labelled with digoxigenin RNA
Visualized with: Alkaline phosphatase
Results
Specimen 1E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: brain Present Widespread 1E
TS26: hippocampus Strong 1E
TS26: hypothalamus Present Regionally restricted 1E Expressed in the ventral medial hypothalamic nucleus.
Specimen 2E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: main olfactory bulb Present Regionally restricted 2E Expressed in the mitral cell layer, olfactory nerve layer and granular cell layer.
Specimen 2K: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: main olfactory bulb granule cell layer Present 2K
TS28: main olfactory bulb mitral cell layer Present 2K
TS28: main olfactory bulb glomerular layer Absent 2K
Specimen 3I: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cortical plate Strong 3I
TS26: cortical subplate Strong 3I
TS26: cerebral cortex ventricular zone Absent 3I
Specimen 3J: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: cortical layer II Present 3J
TS28: cortical layer III Present 3J
TS28: cortical layer IV Present 3J
TS28: cortical layer V Present 3J
TS28: cortical layer VI Present 3J
Specimen 4E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: dentate gyrus Strong 4E
TS26: hippocampus CA1 Strong 4E
TS26: hippocampus CA3 Strong 4E
Specimen 4K: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: dentate gyrus Strong 4K
TS28: hippocampus CA1 Strong 4K
TS28: hippocampus CA3 Strong 4K
Specimen 6E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: cerebellum Strong 6E Expressed in all layers of the developing cerebellum, including the molecular layer.
TS26: cerebellum Purkinje cell layer Strong 6E
TS26: cerebellum lateral part mantle layer Strong 6E
TS26: cerebellum lateral part marginal layer Strong 6E
TS26: cerebellum lateral part ventricular layer Strong 6E
TS26: inferior colliculus Strong 6E
TS26: superior colliculus Strong 6E
Specimen 7E: postnatal day 10 (more )
Structure Level Pattern Image Note
TS28: cerebellum Purkinje cell layer Present 7E
TS28: cerebellum internal granule cell layer Present 7E
TS28: cerebellum molecular layer Present 7E
TS28: deep cerebellar nucleus Present 7E
Specimen 8E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: spinal cord Present Regionally restricted 8E Expressed in the gray matter. Higher levels of expression are observed in the ventral part where motor neurons are located.
TS26: dorsal root ganglion Present Regionally restricted 8E Expressed in a subset of sensory neuron nuclei.
Specimen 9E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: trigeminal ganglion Strong Regionally restricted 9E Expressed in subsets of cell bodies.
Specimen 10E: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: neural retina Present Regionally restricted 10E Expressed in the retinal ganglion cell layer and prospective inner nuclear layer.
TS26: retina inner nuclear layer Present 10E
Specimen not shown: embryonic day 18.5 (more )
Structure Level Pattern Image Note
TS26: olfactory epithelium Present
TS26: vomeronasal organ Absent
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory