ES cell in situ hybridization data

Reference: J:129777, Carter MG; Stagg CA; Falco G; Yoshikawa T; Bassey UC; Aiba K; Sharova LV; Shaik N; Ko MS, An in situ hybridization-based screen for heterogeneously expressed genes in mouse ES cells., Gene Expr Patterns 2008 8(3):181-98.

Table 1

Gene MGI Gene ID Transcription Factor? cDNA clone IDs Signal Intensity Expression Pattern in ES colonies Images
Pou5f1 (Oct3/4, Oct4)MGI:101893YesH3028H01strongHomogeneousPou5f1.jpg
Krt8 (EndoA)MGI:96705NoH3031C01strongPeripheralKrt8.jpg
Zscan4 (Gm397)MGI:2685243yesC0407B02strongSpot-in-ColonyZscan4.jpg
A730008L03Rik (Nelfb)MGI:1931035YesK0109B03v faintHomogeneousA730008L03Rik.jpg
Actl6a (Baf53a)MGI:1861453YesH3080C12faintHomogeneousAct16a.jpg
AireMGI:1338803YesEMM1002-7515871strongHomogeneousAire.jpg
Akp2MGI:87983YesC0257F12medHomogeneousAkp2.jpg
Ankhd1MGI:1921733YesK0400H03v faintHomogeneousAnkhd1.jpg
Ankrd10MGI:1921840YesK0122H01v faintHomogeneousAnkrd10.jpg
Ankrd25MGI:2384568YesH3123C11v faintHomogeneousAnkrd25.jpg
Arid1a (Baf250a)MGI:1935147YesH3023A03strongHomogeneousArid1a.jpg
Arid2MGI:1924294YesK0917G07n/dn/dArid2.jpg
Arid3bMGI:1930768YesC0326H11v faintHomogeneousArid3b.jpg
Ash2lMGI:1344416YesH3147F02v faintHomogeneousAsh2l.jpg
Atf1MGI:1298366YesH4067F10v strongHomogeneousAtf1.jpg
Atf4MGI:88096YesH3124E06faintMosaic-in-ColonyAtf4.jpg
AtmMGI:107202YesH8200G06n/dn/dAtm.jpg
Bat4MGI:2148975YesH3059D08n/dn/dBat4.jpg
BbxMGI:1917758YesH3026G07faintHomogeneousBbx.jpg
BC024969 (Adnp2)MGI:2448562YesC0866H11v faintHomogeneousBC024969.jpg
BC031441MGI:2385323YesH8230G02v strongHomogeneousBC031441.jpg
BC068171 (Dkc1)MGI:1861727NoH3066D04v faintHomogeneousBC068171.jpg
Blimp1 (Prdm1)MGI:99655YesEMM1032-597986n/dn/dBlimp1.jpg
Bnc2MGI:2443805YesH3065E10v faintHomogeneousBnc2.jpg
Bpnt1MGI:1338800YesH3057C10n/dn/dBpnt1.jpg
Bteb1 (Klf9)MGI:1333856YesH3027A04v faintHomogeneousBteb1.jpg
Cbfa2t1h (Runx1t1)MGI:104793YesH3125F02v faintHomogeneousCbfa2t1h.jpg
Cbfa2t2h (Cbfa2t2)MGI:1333833YesH3091A05v faintHomogeneousCbfa2t2h.jpg
Cbx8MGI:1353589YesH4002D08n/dn/dCbx8.jpg
Cct4MGI:104689NoH3027F12faintHomogeneousCct4.jpg
Cdk7MGI:102956YesH3002H05n/dn/dCdk7.jpg
CpeMGI:101932NoH4028H11n/dn/dCpe.jpg
Crsp3 (Med23)MGI:1917458NoH4006A08n/dn/dCrsp3.jpg
CsdaMGI:2137670YesC0202D02faintHomogeneousCsda.jpg
Csen (Kcnip3)MGI:1929258YesK0906H01n/dn/dCsen.jpg
CthMGI:1339968NoH3103D05n/dn/dCth.jpg
Dazap2MGI:1344344YesA0813H07n/dn/dDazap2.jpg
Dctn4MGI:1914915NoH4070C12n/dn/dDctn4.jpg
Ddx4 (Mvh)MGI:102670NoH3134G04n/dn/dDdx4.jpg
Dedd2MGI:1914629YesH4061C06medHomogeneousDedd2.jpg
DekMGI:1926209YesH3138A12faintHomogeneousDek.jpg
Dll1MGI:104659NoMMM1013-9202259n/dn/dDll1.jpg
Dpf2 (Req)MGI:109529YesC0818B07n/dn/dDpf2.jpg
Dppa3 (Stella, Pgc7)MGI:1920958NoL0289B08strongMosaic-in-ColonyDppa3.jpg
E130016E03Rik (Rad54b)MGI:3605986YesH3116F06n/dn/dE130016E03Rik.jpg
E2f2MGI:1096341YesEMM1002-7498698medMosaic-in-ColonyE2f2.jpg
E2f5MGI:105091YesH3072H12n/dn/dE2f5.jpg
Egr1 (Krox24)MGI:95295YesB0267A11v faintHomogeneousEgr1.jpg
Eif5bMGI:2441772NoH3053D03medHomogeneousEif5b.jpg
Elf3MGI:1101781YesH3015C12v faintHomogeneousElf3.jpg
Ell3MGI:2673679YesE0754G01n/dn/dEll3.jpg
Eno3MGI:95395NoH4027G12strongHomogeneousEno3.jpg
EsrrbMGI:1346832YesH4053E01medMosaic-in-ColonyEsrrb.jpg
Esx1MGI:1096388YesEMM1002-6760787medHomogeneousEsx1.jpg
Etv5MGI:1096867YesC0282F03medHomogeneousEtv5.jpg
Ezh1MGI:1097695YesH3154F11n/dn/dEzh1.jpg
Fem1aMGI:1335089YesC0407G11v faintHomogeneousFem1a.jpg
Fem1bMGI:1335087YesH3029F04n/dn/dFem1b.jpg
Fhl2MGI:1338762YesH3033C07n/dn/dFhl2.jpg
Fosl2MGI:102858YesH3110A12n/dn/dFosl2.jpg
Foxd3 (Genesis)MGI:1347473YesEMM1002-1111636n/dn/dFoxd3.jpg
Fscn1MGI:1352745NoH3006D08strongMosaic-in-ColonyFscn1.jpg
GabpaMGI:95610YesC0260F10v faintHomogeneousGabpa.jpg
Gata1MGI:95661YesH3038A09n/dn/dGata1.jpg
Gata2MGI:95662YesH3009F04faintHomogeneousGata2.jpg
Gata3MGI:95663YesH3049E04medHomogeneousGata3.jpg
GcdhMGI:104541YesC0328C11medHomogeneousGcdh.jpg
Gli1MGI:95727YesA0243G01faintHomogeneousGli1.jpg
Gli2MGI:95728YesK0239G06faintHomogeneousGli2.jpg
Gm1739MGI:2686585NoH3128A09v strongHomogeneousGm1739.jpg
Gmeb1MGI:2135604YesK0502H03n/dn/dGmeb1.jpg
Gtf2a1lfMGI:1919078YesEMM1002-4195952n/dn/dGtf2a1lf.jpg
Gtf2e1MGI:1921447YesH3105C05n/dn/dGtf2e1.jpg
Gtf2e2MGI:1915403YesH3144B01faintHomogeneousGtf2e2.jpg
Gtf2h3MGI:1277143YesH8201G03strongHomogeneousGtf2h3.jpg
Gtf2iMGI:1202722YesH3140H12medHomogeneousGtf2i.jpg
Hes6MGI:1859852YesMMM101365220v strongHomogeneousHes6.jpg
Hmga1MGI:96160YesH3029B11strongHomogeneousHmga1.jpg
Hmgn3MGI:2138069YesB0224F03v faintHomogeneousHmgn3.jpg
Hoxa1MGI:96170YesEMM1032-608139n/dn/dHoxa1.jpg
Hoxb1MGI:96182YesH3031H08strongHomogeneousHoxb1.jpg
Hoxc10MGI:96192YesH3120B02strongHomogeneousHoxc10.jpg
Hoxc6MGI:96197YesEMM1002-25304n/dn/dHoxc6.jpg
Hoxc8MGI:96198YesH4041F10medHomogeneousHoxc8.jpg
Hoxd13MGI:96205YesEMM1002-6823925faintHomogeneousHoxd13.jpg
Hsf2bpMGI:1921627YesH3125B05n/dn/dHsf2bp.jpg
Icsbp1 (Irf8)MGI:96395YesH3072F09n/dn/dIcsbp1.jpg
Ilf2MGI:1915031YesH3029E05medHomogeneousIlf2.jpg
Ing3MGI:1919027YesH4072A09n/dn/dIng3.jpg
Irx2MGI:1197526YesEMM1002-5626242medHomogeneousIrx2.jpg
Irx3MGI:1197522YesH3010C07strongHomogeneousIrx3.jpg
Irx6MGI:1927642YesEMM1002-1856631v faintHomogeneousIrx6.jpg
Jarid1bMGI:1922855YesH3041C04faintHomogeneousJarid1b.jpg
Jmjd2cMGI:1924054YesH4053F10n/dn/dJmjd2c.jpg
JubMGI:1341886NoH3024A03v strongHomogeneousJub.jpg
JunMGI:96646YesH3058C09faintHomogeneousJun.jpg
Khdrbs1MGI:893579YesA0501F06n/dn/dKhdrbs1.jpg
Klf2MGI:1342772YesEMM1002-7515994v strongHomogeneousKlf2.jpg
Klf4MGI:1342287YesH3015B01n/dn/dKlf4.jpg
Klf5MGI:1338056YesH3102C04v faintHomogeneousKlf5.jpg
L3mbtl2MGI:2443584YesA0354D01v faintHomogeneousL3mbtl2.jpg
Lamb1-1 (Lamb1)MGI:96743NoH3147C04n/dn/dLamb1-1.jpg
Lass4 (Trh1)MGI:1914510YesH3129C07n/dn/dLass4.jpg
Lmyc1 (Mycl1)MGI:96799YesH3024G07medHomogeneousLmyc1.jpg
Mcm3MGI:101845YesC0403F03strongHomogeneousMcm3.jpg
Mef2dMGI:99533YesC0261E02v faintHomogeneousMef2d.jpg
MgaMGI:1352483YesK0110B04v faintHomogeneousMga.jpg
Miz1 (Pias2)MGI:1096566YesK0232F02n/dn/dMiz1.jpg
Mll3MGI:2444959YesH3057C11n/dn/dMll3.jpg
Mnat1MGI:106207YesC0025B02n/dn/dMnat1.jpg
Mrpl49MGI:108180NoH3039A04v faintHomogeneousMrp149.jpg
Mtf2MGI:105050YesH3048E07faintHomogeneousMtf2.jpg
Mxd4MGI:104991YesH3131B07v faintHomogeneousMxd4.jpg
Mxi1MGI:97245YesH4077G09n/dn/dMxi1.jpg
Mybl2 (Bmyb)MGI:101785YesH3144E01faintHomogeneousMybl2.jpg
Mycn (Nmyc1)MGI:97357YesH4041A05v strongHomogeneousMycn.jpg
Myod1 (MyoD)MGI:97275YesEMM1002-1452165v strongHomogeneousMyod1.jpg
Myst2MGI:2182799YesH3107B07faintHomogeneousMyst2.jpg
NanogMGI:1919200YesH3050A07faintMosaic-in-ColonyNanog.jpg
Nanos1MGI:2669254NoK0409A10n/dn/dNanos1.jpg
Ncoa1MGI:1276523YesA0400A03v faintHomogeneousNcoa1.jpg
Neurod1MGI:1339708YesH4035E12n/dn/dNeurod1.jpg
Nf1MGI:97306NoH4070B01n/dn/dNf1.jpg
Nfatc2ipMGI:1329015YesH3046E09n/dn/dNfatc2ip.jpg
Nfe2l2MGI:108420YesC0819F04n/dn/dNfe2l2.jpg
NfkbieMGI:1194908YesMMM1013-7512133faintHomogeneousNfkbie.jpg
NfybMGI:97317YesH3146B03n/dn/dNfyb.jpg
Nkx2-6MGI:97351YesEMM1002-1148995v faintHomogeneousNkx2-6.jpg
Nkx6-2MGI:1352738YesEMM1002-21216n/dn/dNkx6-2.jpg
Notch3MGI:99460YesH4028C12strongHomogeneousNotch3.jpg
Notch4MGI:107471YesEMM1002-6752438v strongHomogeneousNotch4.jpg
Npr1MGI:97371NoL0927H03v faintHomogeneousNpr1.jpg
Nr2f1 (COUPTF1)MGI:1352451YesH3096D07n/dn/dNr2f1.jpg
Nr5a2 (LRH1)MGI:1346834YesH3087G01v faintHomogeneousNr5a2.jpg
Nr6a1 (Gcnf)MGI:1352459YesH3026F12faintHomogeneousNr6a1.jpg
Nrg1MGI:96083YesEMM1032-582702n/dn/dNrg1.jpg
Nrg2/LOC381149MGI:1098246NoEMM1002-5539961v strongHomogeneousNrg2.jpg
NrlMGI:102567YesEMM1002-4982597n/dn/dNrl.jpg
Nufip1MGI:1351474YesH3009B11v faintHomogeneousNufip1.jpg
Otx2MGI:97451YesH3030H12v faintHomogeneousOtx2.jpg
Pa2g4MGI:894684YesH3024B11medMosaic-in-ColonyPa2g4.jpg
PapolgMGI:2442119YesJ0235C01n/dn/dPapolg.jpg
Pcdhb16MGI:2136752YesK0997C06v faintHomogeneousPcdhb16.jpg
Pfdn1MGI:1914449YesH3157C01n/dn/dPfdn1.jpg
Phf17MGI:1925835YesH3127B05v faintHomogeneousPhf17.jpg
Pitx2MGI:109340YesE0473B09n/dn/dPitx2.jpg
PmlMGI:104662YesC0208F04medHomogeneousPml.jpg
Polr2iMGI:1917170YesH3089E01n/dn/dPolr2i.jpg
Polr3kMGI:1914255YesH3083H08n/dn/dPolr3k.jpg
Prkcbp1MGI:1918025YesH3027G06n/dn/dPrkcbp1.jpg
Prrx1MGI:97712YesK0403B09n/dn/dPrrx1.jpg
Rab2bMGI:1923588YesA0363E07v strongHomogeneousRab2b.jpg
Rab35MGI:1924657YesH3136E02n/dn/dRab35.jpg
Rad18MGI:1890476YesC0407D04n/dn/dRad18.jpg
Rai14MGI:1922896YesK0417A05n/dn/dRai14.jpg
Ranbp1MGI:96269NoH3104D06faintHomogeneousRanbp1.jpg
RbakMGI:1927369YesH3091E03n/dn/dRbak.jpg
Rbpsuh (Rbpj)MGI:96522YesH4069C09faintHomogeneousRbpsuh.jpg
Rcor1MGI:106340YesH4030A11n/dn/dRcor1.jpg
RdbpMGI:102744NoH3025E10faintHomogeneousRdbp.jpg
RestMGI:104897YesH3153C03medMosaic-in-ColonyRest.jpg
Rfx2MGI:106583YesH8188D01n/dn/dRfx2.jpg
Rhox9 (Psx2)MGI:1890128YesL0042E08faintSpot-in-ColonyRhox9.jpg
Rpo1-2MGI:108014YesH8164D08medHomogeneousRpo1-2.jpg
Rpo1-3MGI:108403YesH3121B06v faintHomogeneousRpo1-3.jpg
Ruvbl1MGI:1928760YesH3016C12v faintHomogeneousRuvbl1.jpg
Sall1MGI:1889585YesH4055D01medHomogeneousSall1.jpg
Sin3bMGI:107158YesC0281D12faintHomogeneousSin3b.jpg
Sirt1MGI:2135607YesH3119B12v faintHomogeneousSirt1.jpg
Sirt2MGI:1927664YesC0285H01faintHomogeneousSirt2.jpg
Sirt3MGI:1927665YesA0352G08n/dn/dSirt3.jpg
Sitpec (Ecsit)MGI:1349469YesH4049D06v faintHomogeneousSitpec.jpg
Six4MGI:106034YesH4056D02v faintHomogeneousSix4.jpg
Skd3 (Clpb)MGI:1100517YesC0341A10medHomogeneousSkd3.jpg
Skiip (Snw1)MGI:1913604YesC0218H03v faintHomogeneousSkiip.jpg
Slc4a10MGI:2150150YesH4035E11n/dn/dSlc4a10.jpg
Smarca1 (Snf2l)MGI:1935127YesH4004G06n/dn/dSmarca1.jpg
Smarca4 (Brg1)MGI:88192YesC0402B01faintHomogeneousSmarca4.jpg
Sox13MGI:98361YesL0928B04medHomogeneousSox13.jpg
Sox15MGI:98363YesH3081C12n/dn/dSox15.jpg
Sox2MGI:98364YesC0403H11faintHomogeneousSox2.jpg
Sp1MGI:98372YesH3016H10n/dn/dSp1.jpg
Sp5MGI:1927715YesEMM1002-5883694n/dn/dSp5.jpg
SqrdlMGI:1929899NoH3122H06n/dn/dSqrdl.jpg
Stat4MGI:103062YesH4077D08n/dn/dStat4.jpg
Suv39h1MGI:1099440YesH3141G04v faintHomogeneousSuv39h1.jpg
T (Brachyury)MGI:98472YesH3029B05n/dn/dT.jpg
Taf5MGI:2442144YesK0278H01n/dn/dTaf5.jpg
Taf5lMGI:1919039YesB0410D11v faintHomogeneousTaf5l.jpg
Taf7MGI:1346348YesH3071E08v faintHomogeneousTaf7.jpg
TbpMGI:101838YesK0240H01v faintHomogeneousTbp.jpg
Tcea3MGI:1196908YesH4005B08faintHomogeneousTcea3.jpg
Tcerg1MGI:1926421YesH3128B05faintHomogeneousTcerg1.jpg
Tcf15MGI:104664YesEMM1002-1464550n/dn/dTcf15.jpg
Tcf7MGI:98507YesH4003H11n/dn/dTcf7.jpg
Tcf7l2MGI:1202879YesH4028E05n/dn/dTcf7l2.jpg
Tcfap2eMGI:2679630YesH3100H07n/dn/dTcfap2e.jpg
Tcfap4MGI:103239YesMMM1013-9200312v faintHomogeneousTcfap4.jpg
TfamMGI:107810YesH8244A10medHomogeneousTfam.jpg
Tfdp2MGI:107167YesH4061E07v faintHomogeneousTfdp2.jpg
Th1lMGI:1926424YesC0208E04faintHomogeneousTh1l.jpg
Thrap2 (Med13l)MGI:2670178YesH3137F02faintHomogeneousThrap2.jpg
Tle4MGI:104633YesH3103G12n/dn/dTle4.jpg
ToxMGI:2181659YesK0748A03n/dn/dTox.jpg
Trib3MGI:1345675YesH3035B01n/dn/dTrib3.jpg
Trp63MGI:1330810YesE0485F10v faintHomogeneousTrp63.jpg
Trps1MGI:1927616YesA0909F05n/dn/dTrps1.jpg
Trpv6MGI:1927259YesH8162C12v faintHomogeneousTrpv6.jpg
Ttbk1MGI:2147036NoH3137A12n/dn/dTtbk1.jpg
Ube2d3MGI:1913355NoH3082D12v faintHomogeneousUbd2e3.jpg
Ureb1MGI:1926884NoH3129D11v faintHomogeneousUreb1.jpg
Usp39MGI:107622NoH3005G05v faintHomogeneousUsp39.jpg
Whsc2 (NelfA)MGI:1346098YesC0288C12medSpot-in-ColonyWhsc2.jpg
Yeats4MGI:1927224YesH4002F05v faintHomogeneousYeats4.jpg
Zfp105MGI:1277119NoH3154D12v faintHomogeneousZfp105.jpg
Zfp111MGI:1929114YesK0957E07n/dn/dZfp111.jpg
Zfp143MGI:1277969YesL0949H07n/dn/dZfp143.jpg
Zfp206 (Zscan10)MGI:3040700YesH4040D10n/dn/dZfp206.jpg
Zfp219MGI:1917140NoH3014D06medHomogeneousZfp219.jpg
Zfp239MGI:1306812YesH4060F01medHomogeneousZfp239.jpg
Zfp278 (Patz1)MGI:1891832YesK0852A06v strongHomogeneousZfp278.jpg
Zfp286MGI:2384758YesC0919G04n/dn/dZfp286.jpg
Zfp296MGI:1926956NoH3086D06medHomogeneousZfp296.jpg
Zfp354bMGI:1351476YesEMM1032-6904991n/dn/dZfp354b.jpg
Zfp42 (Rex1)MGI:99187YesH3036F04strongMosaic-in-ColonyZfp42.jpg
Zfp445MGI:2143340YesK0508E08v faintHomogeneousZfp445.jpg
Zfp51MGI:99198YesH3122C02n/dn/dZfp51.jpg
Zfp553MGI:2384725YesC0405D09v strongHomogeneousZfp553.jpg
Zfp62MGI:99662YesB0129B06n/dn/dZfp62.jpg
Zfp82MGI:1890753YesH4054E06faintHomogeneousZfp82.jpg
Zic3MGI:106676YesB0716B04faintHomogeneousZic3.jpg
1110005A23RikMGI:1913368YesH3148B10v faintHomogeneous1110005A23Rik.jpg
1110025L05Rik (Bola2)MGI:1913412YesH3085B11v faintHomogeneous1110025L05Rik.jpg
1110051B16RikMGI:1916048YesE0702B01n/dn/d1110051B16Rik.jpg
1110054H05Rik (Foxk2)MGI:1916087YesC0202E10faintHomogeneous1110054H05Rik.jpg
1700012H05Rik (Rbmxl2)MGI:1923822NoEMM1002-7533455v faintHomogeneous1700012H05Rik.jpg
1810007M14RikMGI:1914617YesH4079B04faintHomogeneous1810007M14Rik.jpg
2410081M15RikMGI:1920930NoH3093G04v strongHomogeneous2410081M15Rik.jpg
2610014H22Rik (Wbp7)MGI:109565YesH3159D08n/dn/d2610014H22Rik.jpg
2810405K07Rik (Zfp661)MGI:1919430yesK0914F08faintHomogeneous2810405K07Rik.jpg
4921520G13RikMGI:1913979YesMMM1013-9335122n/dn/d4921520G13Rik.jpg
4930504E06RikMGI:1922257NoK0251E12v faintHomogeneous4930504E06Rik.jpg
4930548G07RikMGI:1922589YesL0924F06medHomogeneous4930548G07Rik.jpg
4933406J07Rik (Syce1)MGI:1921325NoH4051E05v strongHomogeneous4933406J07Rik.jpg
5830417I10RikMGI:1923272YesH3038H08n/dn/d5830417l10Rik.jpg
6720457D02RikMGI:1924367YesB0142C08n/dn/d6720457D02Rik.jpg
9030612M13RikMGI:1921793YesH3010E12n/dn/d9030612M13Rik.jpg