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Col6a4 Gene Detail
Summary
  • Symbol
    Col6a4
  • Name
    collagen, type VI, alpha 4
  • Synonyms
    1110001D15Rik, Dvwa, EG235580, Vwa6
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915803
    NCBI Gene: 68553
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:105866653-105973982 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 57.39 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    3513 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915803
 protein coding gene Chr9:105866653-105975729 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035219
 protein coding gene Chr9:107754608-107868235 (-)
A/J MGP_AJ_G0035199
 protein coding gene Chr9:103872947-103984851 (-)
AKR/J MGP_AKRJ_G0035131
 protein coding gene Chr9:106454787-106569054 (-)
BALB/cJ MGP_BALBcJ_G0035192
 protein coding gene Chr9:103565654-103673828 (-)
C3H/HeJ MGP_C3HHeJ_G0034902
 protein coding gene Chr9:106868810-106983769 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035712
 protein coding gene Chr9:110719192-110832569 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032610
 protein coding gene Chr9:101378766-101488001 (-)
CAST/EiJ MGP_CASTEiJ_G0034214
 protein coding gene Chr9:106755221-106866767 (-)
CBA/J MGP_CBAJ_G0034871
 protein coding gene Chr9:114601562-114718821 (-)
DBA/2J MGP_DBA2J_G0035032
 protein coding gene Chr9:103341212-103449873 (-)
FVB/NJ MGP_FVBNJ_G0034980
 protein coding gene Chr9:102112442-102219822 (-)
LP/J MGP_LPJ_G0035108
 protein coding gene Chr9:107968367-108091047 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035019
 protein coding gene Chr9:116276394-116390107 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035734
 protein coding gene Chr9:106704582-106811716 (-)
PWK/PhJ MGP_PWKPhJ_G0033921
 protein coding gene Chr9:103633188-103742216 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033756
 protein coding gene Chr9:106759653-106872492 (-)
WSB/EiJ MGP_WSBEiJ_G0034334
 protein coding gene Chr9:106600365-106718031 (-)



Homology
more
  • Human Ortholog
    COL6A4P1, collagen type VI alpha 4 pseudogene 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    COL6A4P1, collagen type VI alpha 4 pseudogene 1
  • Synonyms
    COL6A4, COL6A4P, DIVA, DVWA, FAME3, VWA6
  • Links
    NCBI Gene ID: 344875

  • Chr Location
    3p25.1; chr3:15151833-15205959 (-)  GRCh38
  • Human Ortholog
    COL6A4P2, collagen type VI alpha 4 pseudogene 2
  • Synonyms
    COL6A4
  • Links
    NCBI Gene ID: 646300

  • Chr Location
    3q22.1; chr3:130212820-130273806 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    12
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    834
  • Tissues
    56
  • cDNA Data
    7
  • Literature Summary
    10
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000032572 Ensembl Gene Model | MGI Sequence Detail 107330 C57BL/6J ±  kb
transcript ENSMUST00000121963 Ensembl | MGI Sequence Detail 7371 Not Applicable  
polypeptide ENSMUSP00000112472 Ensembl | MGI Sequence Detail 2309 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    Genomic 2
    cDNA 7
    Primer pair 4
    Other 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:2143031, MGI:2143224, MGI:3648943
References
more
  • Summaries
    All 37
    Developmental Gene Expression 10
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:345835 Qiu C, et al., A single-cell time-lapse of mouse prenatal development from gastrula to birth. Nature. 2024 Feb;626(8001):1084-1093
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory