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Usp36 Gene Detail
Summary
  • Symbol
    Usp36
  • Name
    ubiquitin specific peptidase 36
  • Synonyms
    2700002L06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1919594
    NCBI Gene: 72344
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:118150477-118181070 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 83.06 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    960 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1919594
 protein coding gene Chr11:118150477-118181086 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019463
 protein coding gene Chr11:122581292-122611907 (-)
A/J MGP_AJ_G0019431
 protein coding gene Chr11:117144032-117175484 (-)
AKR/J MGP_AKRJ_G0019401
 protein coding gene Chr11:120696655-120731029 (-)
BALB/cJ MGP_BALBcJ_G0019406
 protein coding gene Chr11:117506683-117537142 (-)
C3H/HeJ MGP_C3HHeJ_G0019212
 protein coding gene Chr11:121000566-121033109 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019855
 protein coding gene Chr11:126324842-126357221 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017480
 protein coding gene Chr11:114153392-114184436 (-)
CAST/EiJ MGP_CASTEiJ_G0018766
 protein coding gene Chr11:122426509-122459062 (-)
CBA/J MGP_CBAJ_G0019183
 protein coding gene Chr11:131260637-131290997 (-)
DBA/2J MGP_DBA2J_G0019295
 protein coding gene Chr11:116531793-116562304 (-)
FVB/NJ MGP_FVBNJ_G0019287
 protein coding gene Chr11:116171471-116202546 (-)
LP/J MGP_LPJ_G0019365
 protein coding gene Chr11:122893389-122923969 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019320
 protein coding gene Chr11:130227694-130259659 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019894
 protein coding gene Chr11:121355284-121387129 (-)
PWK/PhJ MGP_PWKPhJ_G0018532
 protein coding gene Chr11:117901806-117932698 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018324
 protein coding gene Chr11:121081393-121112123 (-)
WSB/EiJ MGP_WSBEiJ_G0018818
 protein coding gene Chr11:121320358-121351064 (-)



Homology
more
  • Human Ortholog
    USP36, ubiquitin specific peptidase 36
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    USP36, ubiquitin specific peptidase 36
  • Synonyms
    DUB1
  • Links
    NCBI Gene ID: 57602
    neXtProt AC: NX_Q9P275
    UniProt: Q9P275

  • Chr Location
    17q25.3; chr17:78787381-78841441 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotypes from 2 alleles in 2 genetic backgrounds
    11 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a gene trap allele display lethality before implantation and arrest at the morula stage.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    37
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    56
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000033909 Ensembl Gene Model | MGI Sequence Detail 30594 C57BL/6J ±  kb
    transcript ENSMUST00000106296 Ensembl | MGI Sequence Detail 5655 Not Applicable  
    polypeptide ENSMUSP00000101903 Ensembl | MGI Sequence Detail 1098 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 59
      cDNA 59

      Microarray probesets 7
    References
    more
    • Summaries
      All 37
      Gene Ontology 8
      Phenotypes 11
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory