Samd13 Gene Detail

Summary

• Symbol
  Samd13
• Name
  sterile alpha motif domain containing 13
• Synonyms
  LOC381481

• Feature Type
  protein coding gene
• IDs
  MGI:2686498
  NCBI Gene: 75015
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:146350950-146391347 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 72.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1396 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2686498	protein coding gene	Chr3:146350944-146391555 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0027978	protein coding gene	Chr3:150174230-150216907 (-)
A/J	MGP_AJ_G0027937	protein coding gene	Chr3:144776593-144817742 (-)
AKR/J	MGP_AKRJ_G0027903	protein coding gene	Chr3:148647120-148694449 (-)
BALB/cJ	MGP_BALBcJ_G0027949	protein coding gene	Chr3:144600434-144641351 (-)
C3H/HeJ	MGP_C3HHeJ_G0027679	protein coding gene	Chr3:149012026-149055093 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0028392	protein coding gene	Chr3:155202773-155254458 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025730	protein coding gene	Chr3:139834850-139874045 (-)
CAST/EiJ	MGP_CASTEiJ_G0027132	protein coding gene	Chr3:148998842-149041782 (-)
CBA/J	MGP_CBAJ_G0027654	protein coding gene	Chr3:160710622-160760299 (-)
DBA/2J	MGP_DBA2J_G0027794	protein coding gene	Chr3:143930352-143972960 (-)
FVB/NJ	MGP_FVBNJ_G0027761	protein coding gene	Chr3:141343990-141384010 (-)
LP/J	MGP_LPJ_G0027905	protein coding gene	Chr3:151557447-151600836 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027794	protein coding gene	Chr3:168988504-169031788 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0028451	protein coding gene	Chr3:148229586-148272717 (-)
PWK/PhJ	MGP_PWKPhJ_G0026855	protein coding gene	Chr3:143789581-143833192 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0026683	protein coding gene	Chr3:146393405-146433002 (-)
WSB/EiJ	MGP_WSBEiJ_G0027212	protein coding gene	Chr3:149209292-149253542 (-)

Homology

• Human Ortholog
  SAMD13, sterile alpha motif domain containing 13

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  SAMD13, sterile alpha motif domain containing 13
  
• Synonyms
  DJL, HSD-41, HSD-42
• Links
  HGNC:24582

  NCBI Gene ID: 148418

  neXtProt AC: NX_Q5VXD3

  UniProt: Q5VXD3

  
  
• Chr Location
  1p31.1; chr1:84298366-84389957 (+)  GRCh38

---

• MGI Vertebrate Homology
  Samd13 stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: SAMD13
• Gene Tree
  Samd13
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Samd13
• Find Mice (IMSR)
  14 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas
• Other Vertebrate Links
  Xenbase samd13

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  17
• UniProt
  1
• CCDS
  CCDS38667.1, CCDS89699.1, CCDS89700.1

• Ensembl
  ENSMUSG00000048652 (Evidence)
• NCBI Gene
  75015

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000048652	Ensembl Gene Model | MGI Sequence Detail	40398	C57BL/6J
transcript	ENSMUST00000147113	Ensembl | MGI Sequence Detail	729	Not Applicable
polypeptide	ENSMUSP00000118934	Ensembl | MGI Sequence Detail	102	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• Protein Ontology
  PR:000030297 sterile alpha motif domain-containing protein 13
  (term hierarchy)

References

• Summaries
  All 10

  Diseases 1

  Phenotypes 2
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Samd13:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36052	Chr3:146389017-146389021 (-)	2,328 bp