Gm12589 Gene Detail

Summary

• Symbol
  Gm12589
• Name
  predicted gene 12589

• Feature Type
  lncRNA gene
• IDs
  MGI:3650371
  NCBI Gene: 102631997
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:121693933-121701145 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 87.79 cM

Strain
Comparison

• SNPs within 2kb
  266 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650371	lncRNA gene	Chr11:121668575-121701148 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005336	lincRNA gene	Chr11:126358155-126365364 (+)
A/J	MGP_AJ_G0005319	lincRNA gene	Chr11:120709238-120716448 (+)
AKR/J	MGP_AKRJ_G0005298	lincRNA gene	Chr11:124376941-124384145 (+)
BALB/cJ	MGP_BALBcJ_G0005301	lincRNA gene	Chr11:121090113-121097330 (+)
C3H/HeJ	MGP_C3HHeJ_G0005250	lincRNA gene	Chr11:124704235-124711447 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005454	lincRNA gene	Chr11:130189322-130196535 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004842	lincRNA gene	Chr11:117698963-117706130 (+)
CAST/EiJ	MGP_CASTEiJ_G0005197	lincRNA gene	Chr11:126195191-126202402 (+)
CBA/J	MGP_CBAJ_G0005239	lincRNA gene	Chr11:135251534-135258745 (+)
DBA/2J	MGP_DBA2J_G0005257	lincRNA gene	Chr11:120101735-120109025 (+)
FVB/NJ	MGP_FVBNJ_G0005282	lincRNA gene	Chr11:119826189-119833396 (+)
LP/J	MGP_LPJ_G0005338	lincRNA gene	Chr11:126644413-126651627 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005264	lincRNA gene	Chr11:134032159-134039388 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005457	lincRNA gene	Chr11:125068276-125075489 (+)
PWK/PhJ	MGP_PWKPhJ_G0005146	lincRNA gene	Chr11:121533248-121540446 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005066	lincRNA gene	Chr11:124802064-124809200 (+)
WSB/EiJ	MGP_WSBEiJ_G0005245	lincRNA gene	Chr11:125028171-125035372 (+)

Homology

• Gene Tree
  Gm12589
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  4

• Ensembl
  ENSMUSG00000085126 (Evidence)
• NCBI Gene
  102631997

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085126	Ensembl Gene Model | MGI Sequence Detail	7213	C57BL/6J
transcript	ENSMUST00000153767	Ensembl | MGI Sequence Detail	638	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm12589:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106433	Chr11:121696312-121696316 (+)	2,381 bp