Gm16104 Gene Detail

Summary

• Symbol
  Gm16104
• Name
  predicted gene 16104

• Feature Type
  lncRNA gene
• IDs
  MGI:3801749
  NCBI Gene: 102634174
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr10:81245409-81247413 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 39.72 cM

Strain
Comparison

• SNPs within 2kb
  91 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3801749	lncRNA gene	Chr10:81245348-81247427 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002880	antisense lncRNA gene	Chr10:82123891-82125895 (+)
A/J	MGP_AJ_G0002857	antisense lncRNA gene	Chr10:79214154-79216158 (+)
AKR/J	MGP_AKRJ_G0002838	antisense lncRNA gene	Chr10:81389519-81391523 (+)
BALB/cJ	MGP_BALBcJ_G0002845	antisense lncRNA gene	Chr10:79433731-79435735 (+)
C3H/HeJ	MGP_C3HHeJ_G0002801	antisense lncRNA gene	Chr10:81491909-81493913 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002988	antisense lncRNA gene	Chr10:84942590-84944594 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002531	antisense lncRNA gene	Chr10:75412519-75414521 (+)
CAST/EiJ	MGP_CASTEiJ_G0002773	antisense lncRNA gene	Chr10:81723776-81725780 (+)
CBA/J	MGP_CBAJ_G0002797	antisense lncRNA gene	Chr10:88260413-88262417 (+)
DBA/2J	MGP_DBA2J_G0002804	antisense lncRNA gene	Chr10:78417972-78419976 (+)
FVB/NJ	MGP_FVBNJ_G0002823	antisense lncRNA gene	Chr10:77671500-77673504 (+)
LP/J	MGP_LPJ_G0002880	antisense lncRNA gene	Chr10:82573727-82575731 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002813	antisense lncRNA gene	Chr10:90100036-90102040 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002991	antisense lncRNA gene	Chr10:81399633-81401637 (+)
PWK/PhJ	MGP_PWKPhJ_G0002731	antisense lncRNA gene	Chr10:78312713-78314721 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002680	antisense lncRNA gene	Chr10:80348629-80350620 (+)
WSB/EiJ	MGP_WSBEiJ_G0002802	antisense lncRNA gene	Chr10:81434242-81436246 (+)

Homology

• Gene Tree
  Gm16104
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  11
• Chemically induced (other)
  1
• Gene trapped
  10
• Genomic Mutations
  1 involving Gm16104
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000085327 (Evidence)
• NCBI Gene
  102634174

Representative Sequences			Length	Strain/Species
genomic	102634174	NCBI Gene Model | MGI Sequence Detail	2005	C57BL/6J
transcript	NR_152732	RefSeq | MGI Sequence Detail	401	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 8
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16104:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr94763	Chr10:81245345-81245362 (+)	-55 bp
Tssr94764	Chr10:81245406-81245436 (+)	12 bp