Gm13398 MGI Mouse Gene Detail - MGI:3652315

Sequence Map

Chr2:26927297-26930865 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3652315	protein coding gene	Chr2:26926691-26930870 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003528	antisense lncRNA gene	Chr2:25009548-25013103 (+)
A/J	MGP_AJ_G0003508	antisense lncRNA gene	Chr2:24061732-24065300 (+)
AKR/J	MGP_AKRJ_G0003487	antisense lncRNA gene	Chr2:24854460-24858028 (+)
BALB/cJ	MGP_BALBcJ_G0003497	antisense lncRNA gene	Chr2:24181479-24185047 (+)
C3H/HeJ	MGP_C3HHeJ_G0003445	antisense lncRNA gene	Chr2:24791784-24795352 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003635	antisense lncRNA gene	Chr2:25859901-25863469 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003145	antisense lncRNA gene	Chr2:22899378-22903040 (+)
CAST/EiJ	MGP_CASTEiJ_G0003408	antisense lncRNA gene	Chr2:24668328-24671886 (+)
CBA/J	MGP_CBAJ_G0003442	antisense lncRNA gene	Chr2:26755263-26758831 (+)
DBA/2J	MGP_DBA2J_G0003450	antisense lncRNA gene	Chr2:23880919-23884487 (+)
FVB/NJ	MGP_FVBNJ_G0003469	antisense lncRNA gene	Chr2:23641473-23645012 (+)
LP/J	MGP_LPJ_G0003523	antisense lncRNA gene	Chr2:24954581-24958136 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003457	antisense lncRNA gene	Chr2:26800640-26804197 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003638	antisense lncRNA gene	Chr2:24792552-24796120 (+)
PWK/PhJ	MGP_PWKPhJ_G0003363	antisense lncRNA gene	Chr2:23674214-23677788 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003308	antisense lncRNA gene	Chr2:24938450-24942891 (+)
WSB/EiJ	MGP_WSBEiJ_G0003443	antisense lncRNA gene	Chr2:24905290-24908824 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	ENSMUSG00000087364	Ensembl Gene Model \| MGI Sequence Detail	3569	C57BL/6J	± kb
transcript	ENSMUST00000149378	Ensembl \| MGI Sequence Detail	2837	Not Applicable
polypeptide	ENSMUSP00000158962	Ensembl \| MGI Sequence Detail	61	Not Applicable

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Summaries

All 12

Phenotypes 2
Earliest

J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm13398:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr442	Chr2:26927731-26927732 (+)	435 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/10/2024 MGI 6.24