Gm11571 Gene Detail

Summary

• Symbol
  Gm11571
• Name
  predicted gene 11571

• Feature Type
  lncRNA gene
• IDs
  MGI:3650087
  NCBI Gene: 102635562
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:99943112-99976809 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 63.39 cM

Strain
Comparison

• SNPs within 2kb
  1025 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650087	lncRNA gene	Chr11:99943112-99976809 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003058	antisense lncRNA gene	Chr11:102798559-102833146 (+)
A/J	MGP_AJ_G0003035	antisense lncRNA gene	Chr11:98458673-98492314 (+)
AKR/J	MGP_AKRJ_G0003016	antisense lncRNA gene	Chr11:101502818-101536476 (+)
BALB/cJ	MGP_BALBcJ_G0003022	antisense lncRNA gene	Chr11:98975189-99008642 (+)
C3H/HeJ	MGP_C3HHeJ_G0002978	antisense lncRNA gene	Chr11:101698355-101732307 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003164	antisense lncRNA gene	Chr11:105965656-106000949 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002702	antisense lncRNA gene	Chr11:95911612-95945706 (+)
CAST/EiJ	MGP_CASTEiJ_G0002948	antisense lncRNA gene	Chr11:102678202-102712880 (+)
CBA/J	MGP_CBAJ_G0002975	antisense lncRNA gene	Chr11:110400010-110436103 (+)
DBA/2J	MGP_DBA2J_G0002981	antisense lncRNA gene	Chr11:98033098-98066746 (+)
FVB/NJ	MGP_FVBNJ_G0003000	antisense lncRNA gene	Chr11:97533101-97566890 (+)
LP/J	MGP_LPJ_G0003057	antisense lncRNA gene	Chr11:103334206-103372226 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002988	antisense lncRNA gene	Chr11:110026055-110059733 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003168	antisense lncRNA gene	Chr11:101879644-101913544 (+)
PWK/PhJ	MGP_PWKPhJ_G0002906	antisense lncRNA gene	Chr11:99063912-99097653 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002851	antisense lncRNA gene	Chr11:101571949-101609044 (+)
WSB/EiJ	MGP_WSBEiJ_G0002978	antisense lncRNA gene	Chr11:101846332-101881195 (+)

Homology

• Gene Tree
  Gm11571
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Gm11571
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000087581 (Evidence)
• NCBI Gene
  102635562

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087581	Ensembl Gene Model | MGI Sequence Detail	33698	C57BL/6J
transcript	ENSMUST00000136820	Ensembl | MGI Sequence Detail	2396	Not Applicable

References

• Summaries
  All 12

  Phenotypes 7
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:357457 Kumar V, et al., Keratin-dependent thymic stromal lymphopoietin expression suggests a link between skin blistering and atopic disease. J Allergy Clin Immunol. 2016;138(5):1461-1464

TSS for Gm11571:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104894	Chr11:99942930-99942941 (+)	-176 bp
Tssr104895	Chr11:99943086-99943091 (+)	-23 bp
Tssr104896	Chr11:99943107-99943118 (+)	1 bp