Gm16169 Gene Detail

Summary

• Symbol
  Gm16169
• Name
  predicted gene 16169

• Feature Type
  lncRNA gene
• IDs
  MGI:3802011
  NCBI Gene: 102639427
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:11026722-11038505 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 7.80 cM

Strain
Comparison

• SNPs within 2kb
  365 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3802011	lncRNA gene	Chr17:11026721-11045512 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015336	unclassified non-coding RNA gene	Chr17:8413341-8432933 (+)
A/J	MGP_AJ_G0015311	unclassified non-coding RNA gene	Chr17:8314959-8333846 (+)
AKR/J	MGP_AKRJ_G0015274	unclassified non-coding RNA gene	Chr17:8068446-8089257 (+)
BALB/cJ	MGP_BALBcJ_G0015274	unclassified non-coding RNA gene	Chr17:8094051-8112835 (+)
C3H/HeJ	MGP_C3HHeJ_G0015098	unclassified non-coding RNA gene	Chr17:8342209-8365542 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015728	unclassified non-coding RNA gene	Chr17:8741923-8762463 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013468	unclassified non-coding RNA gene	Chr17:6081435-6102460 (-)
CAST/EiJ	MGP_CASTEiJ_G0014649	unclassified non-coding RNA gene	Chr17:8377291-8400606 (+)
CBA/J	MGP_CBAJ_G0015077	unclassified non-coding RNA gene	Chr17:9080192-9099163 (+)
DBA/2J	MGP_DBA2J_G0015172	unclassified non-coding RNA gene	Chr17:7953349-7972965 (+)
FVB/NJ	MGP_FVBNJ_G0015179	unclassified non-coding RNA gene	Chr17:7904242-7923927 (+)
LP/J	MGP_LPJ_G0015252	unclassified non-coding RNA gene	Chr17:8208042-8227412 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015205	unclassified non-coding RNA gene	Chr17:8738531-8759293 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015768	unclassified non-coding RNA gene	Chr17:8363876-8383466 (+)
PWK/PhJ	MGP_PWKPhJ_G0014439	unclassified non-coding RNA gene	Chr17:7645438-7664504 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014226	unclassified non-coding RNA gene	Chr17:7713267-7734370 (+)
WSB/EiJ	MGP_WSBEiJ_G0014756	unclassified non-coding RNA gene	Chr17:8672932-8691987 (+)

Homology

• Gene Tree
  Gm16169
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  96 phenotype references
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm16169
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000089907 (Evidence)
• NCBI Gene
  102639427

Representative Sequences			Length	Strain/Species
genomic	102639427	NCBI Gene Model | MGI Sequence Detail	11784	C57BL/6J
transcript	NR_167741	RefSeq | MGI Sequence Detail	2006	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 104

  Phenotypes 96
• Earliest
  J:13141 SIDMAN RL, et al., MUTANT MICE (QUAKING AND JIMPY) WITH DEFICIENT MYELINATION IN THE CENTRAL NERVOUS SYSTEM. Science. 1964 Apr 17;144:309-11
• Latest
  J:312601 Ogorek M, et al., Atp7a and Atp7b regulate copper homeostasis in developing male germ cells in mice. Metallomics. 2017 Sep 20;9(9):1288-1303

TSS for Gm16169:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr142580	Chr17:11026714-11026728 (+)	-1 bp