Gm20609 Gene Detail

Summary

• Symbol
  Gm20609
• Name
  predicted gene 20609

• Feature Type
  lncRNA gene
• IDs
  MGI:5313056
  NCBI Gene: 102637684
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:71146575-71149807 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 36.87 cM

Strain
Comparison

• SNPs within 2kb
  244 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5313056	lncRNA gene	Chr10:71146575-71149807 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005129	lincRNA gene	Chr10:71298966-71302194 (+)
A/J	MGP_AJ_G0005112	lincRNA gene	Chr10:68848709-68851889 (+)
AKR/J	MGP_AKRJ_G0005090	lincRNA gene	Chr10:70736050-70739300 (+)
BALB/cJ	MGP_BALBcJ_G0005093	lincRNA gene	Chr10:69050009-69053231 (+)
C3H/HeJ	MGP_C3HHeJ_G0005042	lincRNA gene	Chr10:70741339-70744563 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005243	lincRNA gene	Chr10:73834144-73837370 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004649	lincRNA gene	Chr10:65419713-65422716 (+)
CAST/EiJ	MGP_CASTEiJ_G0004989	lincRNA gene	Chr10:70899617-70902644 (+)
CBA/J	MGP_CBAJ_G0005032	lincRNA gene	Chr10:76718241-76721491 (+)
DBA/2J	MGP_DBA2J_G0005051	lincRNA gene	Chr10:68205213-68208403 (+)
FVB/NJ	MGP_FVBNJ_G0005073	lincRNA gene	Chr10:67374306-67377512 (+)
LP/J	MGP_LPJ_G0005130	lincRNA gene	Chr10:71738071-71741299 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005056	lincRNA gene	Chr10:78781723-78784947 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005250	lincRNA gene	Chr10:70699647-70702861 (+)
PWK/PhJ	MGP_PWKPhJ_G0004940	lincRNA gene	Chr10:68064056-68067501 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004865	lincRNA gene	Chr10:70068807-70071855 (+)
WSB/EiJ	MGP_WSBEiJ_G0005036	lincRNA gene	Chr10:70654419-70657742 (+)

Homology

• Gene Tree
  Gm20609
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm20609
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000093732 (Evidence)
• NCBI Gene
  102637684

Representative Sequences			Length	Strain/Species
genomic	102637684	NCBI Gene Model | MGI Sequence Detail	3233	C57BL/6J
transcript	NR_152791	RefSeq | MGI Sequence Detail	1527	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87