Gm6686 Pseudogene Detail

Summary

• Symbol
  Gm6686
• Name
  predicted pseudogene 6686

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3646669
  NCBI Gene: 102639811
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr17:15786426-15786683 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3646669	pseudogene	Chr17:15786406-15786727 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011329	pseudogene	Chr17:13413599-13413856 (-)
A/J	MGP_AJ_G0011312	pseudogene	Chr17:13155349-13155606 (-)
AKR/J	MGP_AKRJ_G0011274	pseudogene	Chr17:13121897-13122154 (-)
BALB/cJ	MGP_BALBcJ_G0011287	pseudogene	Chr17:13110189-13110446 (-)
C3H/HeJ	MGP_C3HHeJ_G0011176	pseudogene	Chr17:13314646-13314903 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011579	pseudogene	Chr17:14025971-14026228 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010154	pseudogene	Chr17:11176800-11177056 (-)
CAST/EiJ	MGP_CASTEiJ_G0011001	pseudogene	Chr17:13237191-13237448 (-)
CBA/J	MGP_CBAJ_G0011154	pseudogene	Chr17:14486003-14486260 (-)
DBA/2J	MGP_DBA2J_G0011202	pseudogene	Chr17:12877418-12877675 (-)
FVB/NJ	MGP_FVBNJ_G0011207	pseudogene	Chr17:12724639-12724896 (-)
LP/J	MGP_LPJ_G0012157	pseudogene	Chr3:69880020-69880277 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011203	pseudogene	Chr17:14013446-14013703 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011558	pseudogene	Chr17:13365886-13366143 (-)
PWK/PhJ	MGP_PWKPhJ_G0010870	pseudogene	Chr17:12370534-12370791 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010698	pseudogene	Chr17:12312304-12312561 (-)
WSB/EiJ	MGP_WSBEiJ_G0011042	pseudogene	Chr17:13689107-13689364 (-)

Homology

• Gene Tree
  Gm6686
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000095920 (Evidence)
• NCBI Gene
  102639811

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000095920	Ensembl Gene Model | MGI Sequence Detail	258	C57BL/6J
transcript	ENSMUST00000178455	Ensembl | MGI Sequence Detail	258	Not Applicable
polypeptide	XP_036016777	RefSeq | MGI Sequence Detail	86	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;