Mir6347 Gene Detail

Summary

• Symbol
  Mir6347
• Name
  microRNA 6347
• Synonyms
  mmu-mir-6347

• Feature Type
  miRNA gene
• IDs
  MGI:5531245
  NCBI Gene: 102465177
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:167117694-167117794 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5531245	miRNA gene	Chr1:167117694-167117794 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007677	miRNA gene	Chr1:172846538-172846638 (+)
A/J	MGP_AJ_G0007671	miRNA gene	Chr1:165797213-165797313 (+)
AKR/J	MGP_AKRJ_G0007645	miRNA gene	Chr1:170808202-170808302 (+)
BALB/cJ	MGP_BALBcJ_G0007649	miRNA gene	Chr1:166277354-166277454 (+)
C3H/HeJ	MGP_C3HHeJ_G0007593	miRNA gene	Chr1:171040858-171040958 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007823	miRNA gene	Chr1:178644804-178644904 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006987	miRNA gene	Chr1:157643808-157643904 (+)
CAST/EiJ	MGP_CASTEiJ_G0007492	miRNA gene	Chr1:170648152-170648252 (+)
CBA/J	MGP_CBAJ_G0007568	miRNA gene	Chr1:184971073-184971173 (+)
DBA/2J	MGP_DBA2J_G0007602	miRNA gene	Chr1:164642429-164642529 (+)
FVB/NJ	MGP_FVBNJ_G0007618	miRNA gene	Chr1:163091193-163091293 (+)
LP/J	MGP_LPJ_G0007682	miRNA gene	Chr1:173923919-173924019 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007592	miRNA gene	Chr1:192357340-192357440 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007824	miRNA gene	Chr1:170678504-170678604 (+)
PWK/PhJ	MGP_PWKPhJ_G0007425	miRNA gene	Chr1:163847955-163848051 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007326	miRNA gene	Chr1:169457777-169457874 (+)
WSB/EiJ	MGP_WSBEiJ_G0007559	miRNA gene	Chr1:170772898-170772998 (+)

Homology

• Gene Tree
  Mir6347
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Gene trapped
  1
• Genomic Mutations
  2 involving Mir6347
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098379 (Evidence)
• NCBI Gene
  102465177

Representative Sequences			Length	Strain/Species
genomic	102465177	NCBI Gene Model | MGI Sequence Detail	101	C57BL/6J
transcript	NR_105765	RefSeq | MGI Sequence Detail	101	ZRU/MplStud

Other Database
Links

miRBase

MI0021875

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9