Mir6409 Gene Detail

Summary

• Symbol
  Mir6409
• Name
  microRNA 6409
• Synonyms
  mmu-mir-6409

• Feature Type
  miRNA gene
• IDs
  MGI:5531169
  NCBI Gene: 102466646
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr10:75844760-75844851 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5531169	miRNA gene	Chr10:75844760-75844851 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007719	miRNA gene	Chr10:76217323-76217414 (+)
A/J	MGP_AJ_G0007715	miRNA gene	Chr10:73593926-73594017 (+)
AKR/J	MGP_AKRJ_G0007689	miRNA gene	Chr10:75570581-75570672 (+)
BALB/cJ	MGP_BALBcJ_G0007692	miRNA gene	Chr10:73790061-73790152 (+)
C3H/HeJ	MGP_C3HHeJ_G0007638	miRNA gene	Chr10:75619667-75619758 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007868	miRNA gene	Chr10:78907987-78908078 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0007025	miRNA gene	Chr10:70043200-70043321 (+)
CAST/EiJ	MGP_CASTEiJ_G0007533	miRNA gene	Chr10:75940609-75940700 (+)
CBA/J	MGP_CBAJ_G0007611	miRNA gene	Chr10:81989137-81989228 (+)
DBA/2J	MGP_DBA2J_G0007645	miRNA gene	Chr10:72890830-72890921 (+)
FVB/NJ	MGP_FVBNJ_G0007662	miRNA gene	Chr10:72059754-72059845 (+)
LP/J	MGP_LPJ_G0007724	miRNA gene	Chr10:76719763-76719854 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007635	miRNA gene	Chr10:84073661-84073752 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007867	miRNA gene	Chr10:75608509-75608600 (+)
PWK/PhJ	MGP_PWKPhJ_G0007465	miRNA gene	Chr10:72722987-72723078 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007363	miRNA gene	Chr10:74856526-74856617 (+)
WSB/EiJ	MGP_WSBEiJ_G0007600	miRNA gene	Chr10:75595011-75595102 (+)

Homology

• Gene Tree
  Mir6409
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir6409
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000098817 (Evidence)
• NCBI Gene
  102466646

Representative Sequences			Length	Strain/Species
genomic	102466646	NCBI Gene Model | MGI Sequence Detail	92	C57BL/6J
transcript	NR_105836	RefSeq | MGI Sequence Detail	92	ZRU/MplStud

Other Database
Links

miRBase

MI0021946

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4