Mir6342 Gene Detail

Summary

• Symbol
  Mir6342
• Name
  microRNA 6342
• Synonyms
  mmu-mir-6342

• Feature Type
  miRNA gene
• IDs
  MGI:5530650
  NCBI Gene: 102465174
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:29460569-29460693 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  241 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5530650	miRNA gene	Chr1:29460569-29460693 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007602	miRNA gene	Chr1:27577516-27577640 (+)
A/J	MGP_AJ_G0007598	miRNA gene	Chr1:26893004-26893128 (+)
AKR/J	MGP_AKRJ_G0007571	miRNA gene	Chr1:27191117-27191241 (+)
BALB/cJ	MGP_BALBcJ_G0007573	miRNA gene	Chr1:26703448-26703572 (+)
C3H/HeJ	MGP_C3HHeJ_G0007520	miRNA gene	Chr1:27365794-27365918 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0007748	miRNA gene	Chr1:28825987-28826111 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006925	miRNA gene	Chr1:24571240-24571364 (+)
CAST/EiJ	MGP_CASTEiJ_G0007420	miRNA gene	Chr1:27339707-27339831 (+)
CBA/J	MGP_CBAJ_G0007495	miRNA gene	Chr1:29609568-29609692 (+)
DBA/2J	MGP_DBA2J_G0007528	miRNA gene	Chr1:26378972-26379096 (+)
FVB/NJ	MGP_FVBNJ_G0007543	miRNA gene	Chr1:25981129-25981253 (+)
LP/J	MGP_LPJ_G0007610	miRNA gene	Chr1:27827089-27827213 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0007518	miRNA gene	Chr1:31476686-31476810 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007749	miRNA gene	Chr1:27143142-27143266 (+)
PWK/PhJ	MGP_PWKPhJ_G0007353	miRNA gene	Chr1:26117350-26117474 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0007257	miRNA gene	Chr1:27283187-27283311 (+)
WSB/EiJ	MGP_WSBEiJ_G0007484	miRNA gene	Chr1:27151685-27151809 (+)

Homology

• Gene Tree
  Mir6342
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Mir6342
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000099257 (Evidence)
• NCBI Gene
  102465174

Representative Sequences			Length	Strain/Species
genomic	102465174	NCBI Gene Model | MGI Sequence Detail	125	C57BL/6J
transcript	NR_105760	RefSeq | MGI Sequence Detail	125	ZRU/MplStud

Other Database
Links

miRBase

MI0021870

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:105741 Griffiths-Jones S, et al., miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4