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Ccnf Gene Detail
Summary
  • Symbol
    Ccnf
  • Name
    cyclin F
  • Synonyms
    CycF, Fbxo1
  • Feature Type
    protein coding gene
  • IDs
    MGI:102551
    NCBI Gene: 12449
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:24441518-24470333 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 12.32 cM
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    962 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_102551
 protein coding gene Chr17:24441172-24470458 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023294
 protein coding gene Chr17:23181300-23214140 (-)
A/J MGP_AJ_G0023254
 protein coding gene Chr17:22578647-22605826 (-)
AKR/J MGP_AKRJ_G0023221
 protein coding gene Chr17:22642986-22670137 (-)
BALB/cJ MGP_BALBcJ_G0023259
 protein coding gene Chr17:22754113-22782458 (-)
C3H/HeJ MGP_C3HHeJ_G0023019
 protein coding gene Chr17:22982929-23012789 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023702
 protein coding gene Chr17:24222814-24253296 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021179
 protein coding gene Chr17:20033922-20061834 (-)
CAST/EiJ MGP_CASTEiJ_G0022521
 protein coding gene Chr17:22817770-22847800 (-)
CBA/J MGP_CBAJ_G0022995
 protein coding gene Chr17:25051017-25080343 (-)
DBA/2J MGP_DBA2J_G0023124
 protein coding gene Chr17:22149592-22177286 (-)
FVB/NJ MGP_FVBNJ_G0023094
 protein coding gene Chr17:21869146-21901603 (-)
LP/J MGP_LPJ_G0023201
 protein coding gene Chr17:23496018-23525546 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023113
 protein coding gene Chr17:24770987-24801191 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023740
 protein coding gene Chr17:22910243-22939009 (-)
PWK/PhJ MGP_PWKPhJ_G0022270
 protein coding gene Chr17:20909948-20938691 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022089
 protein coding gene Chr17:20933178-20964371 (-)
WSB/EiJ MGP_WSBEiJ_G0022584
 protein coding gene Chr17:22977395-23006681 (-)



Homology
more
  • Human Ortholog
    CCNF, cyclin F
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCNF, cyclin F
  • Synonyms
    FBX1, FBXO1, FTDALS5
  • Links
    NCBI Gene ID: 899
    neXtProt AC: NX_P41002
    UniProt: P41002

  • Chr Location
    16p13.3; chr16:2429394-2458854 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotypes from 2 alleles in 3 genetic backgrounds
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous mutation of this gene results in embryonic lethality between E9.5 and E10.5 due to defects in yolk sac and chorioallantoic placenta maturation. Embryos show incomplete turning, underdeveloped posterior structures, neural tube closure and braindefects. MEFs have cell cycle defects.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    31
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    767
  • Tissues
    9
  • cDNA Data
    111
  • Literature Summary
    9
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 12449 NCBI Gene Model | MGI Sequence Detail 28816 C57BL/6J ±  kb
    transcript NM_001409808 RefSeq | MGI Sequence Detail 3855 ZRU/MplStud  
    polypeptide P51944 UniProt | EBI | MGI Sequence Detail 777 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 114
      Genomic 1
      cDNA 112
      Primer pair 1

      Microarray probesets 5
    Other
    Accession IDs
    less
    MGD-MRK-19400
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 9
      Gene Ontology 8
      Phenotypes 9
    • Earliest
      J:22795 Obermayr F, et al., Mouse cyclin F maps to a conserved linkage group on mouse chromosome 17. Mamm Genome. 1995 Feb;6(2):149-50
    • Latest
      J:314268 Akagawa R, et al., Alternative Functions of Cell Cycle-Related and DNA Repair Proteins in Post-mitotic Neurons. Front Cell Dev Biol. 2021;9:753175
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory