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Lcn3 Gene Detail
Summary
  • Symbol
    Lcn3
  • Name
    lipocalin 3
  • Synonyms
    Vnsp1
  • Feature Type
    protein coding gene
  • IDs
    MGI:102669
    NCBI Gene: 16820
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:25655581-25658111 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 17.99 cM, cytoband A3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    224 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_102669
 protein coding gene Chr2:25655545-25658111 (+)
129S1/SvImJ MGP_129S1SvImJ_G0025469
 protein coding gene Chr2:23690434-23692964 (+)
A/J MGP_AJ_G0025446
 protein coding gene Chr2:22780683-22783214 (+)
AKR/J MGP_AKRJ_G0025416
 protein coding gene Chr2:23526391-23528922 (+)
BALB/cJ MGP_BALBcJ_G0025442
 protein coding gene Chr2:22883776-22886306 (+)
C3H/HeJ MGP_C3HHeJ_G0025203
 protein coding gene Chr2:23453234-23455764 (+)
C57BL/6NJ MGP_C57BL6NJ_G0025886
 protein coding gene Chr2:24447063-24449593 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0023297
 protein coding gene Chr2:21665869-21668415 (+)
CAST/EiJ MGP_CASTEiJ_G0024666
 protein coding gene Chr2:23338826-23341361 (+)
CBA/J MGP_CBAJ_G0025181
 protein coding gene Chr2:25287801-25290331 (+)
DBA/2J MGP_DBA2J_G0025314
 protein coding gene Chr2:22605058-22607589 (+)
FVB/NJ MGP_FVBNJ_G0025276
 protein coding gene Chr2:22349065-22351595 (+)
LP/J MGP_LPJ_G0025400
 protein coding gene Chr2:23622721-23625251 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0025307
 protein coding gene Chr2:25460400-25462930 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0025945
 protein coding gene Chr2:23482076-23484606 (+)
PWK/PhJ MGP_PWKPhJ_G0024414
 protein coding gene Chr2:22400439-22402972 (+)
SPRET/EiJ MGP_SPRETEiJ_G0024214
 protein coding gene Chr2:23600543-23603074 (+)
WSB/EiJ MGP_WSBEiJ_G0024735
 protein coding gene Chr2:23547853-23550383 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000026936 Ensembl Gene Model | MGI Sequence Detail 2531 C57BL/6J ±  kb
transcript ENSMUST00000028304 Ensembl | MGI Sequence Detail 684 Not Applicable  
polypeptide ENSMUSP00000028304 Ensembl | MGI Sequence Detail 187 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-19570
References
more
  • Summaries
    All 24
    Gene Ontology 5
    Phenotypes 3
  • Earliest
    J:23599 Miyawaki A, et al., Possible pheromone-carrier function of two lipocalin proteins in the vomeronasal organ. EMBO J. 1994 Dec 15;13(24):5835-42
  • Latest
    J:274568 Choi JH, et al., LMBR1L regulates lymphopoiesis through Wnt/beta-catenin signaling. Science. 2019 May 10;364(6440)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory