About   Help   FAQ
Zkscan5 Gene Detail
Summary
  • Symbol
    Zkscan5
  • Name
    zinc finger with KRAB and SCAN domains 5
  • Synonyms
    hKraba1, Zfp95
  • Feature Type
    protein coding gene
  • IDs
    MGI:107533
    NCBI Gene: 22757
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:145141372-145158560 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 85.14 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    594 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107533
 protein coding gene Chr5:145141349-145158562 (+)
129S1/SvImJ MGP_129S1SvImJ_G0030363
 protein coding gene Chr5:150632547-150651055 (+)
A/J MGP_AJ_G0030332
 protein coding gene Chr5:144162418-144179457 (+)
AKR/J MGP_AKRJ_G0030264
 protein coding gene Chr5:148646693-148666720 (+)
BALB/cJ MGP_BALBcJ_G0030349
 protein coding gene Chr5:145419691-145439251 (+)
C3H/HeJ MGP_C3HHeJ_G0030060
 protein coding gene Chr5:149466341-149485433 (+)
C57BL/6NJ MGP_C57BL6NJ_G0030794
 protein coding gene Chr5:156126577-156145589 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028015
 protein coding gene Chr5:137899120-137916908 (+)
CAST/EiJ MGP_CASTEiJ_G0029465
 protein coding gene Chr5:149039175-149059129 (+)
CBA/J MGP_CBAJ_G0030030
 protein coding gene Chr5:162566695-162590310 (+)
DBA/2J MGP_DBA2J_G0030180
 protein coding gene Chr5:143878665-143895815 (+)
FVB/NJ MGP_FVBNJ_G0030135
 protein coding gene Chr5:143115960-143133348 (+)
LP/J MGP_LPJ_G0030269
 protein coding gene Chr5:151216582-151235771 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030166
 protein coding gene Chr5:164877878-164896167 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0030834
 protein coding gene Chr5:148549932-148570066 (+)
PWK/PhJ MGP_PWKPhJ_G0029180
 protein coding gene Chr5:143028888-143047006 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029016
 protein coding gene Chr5:146295072-146316275 (+)
WSB/EiJ MGP_WSBEiJ_G0029540
 protein coding gene Chr5:149355353-149373934 (+)



Homology
more
  • Human Ortholog
    ZKSCAN5, zinc finger with KRAB and SCAN domains 5
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ZKSCAN5, zinc finger with KRAB and SCAN domains 5
  • Synonyms
    ZFP-95, ZFP95, ZNF914, ZSCAN37
  • Links
    NCBI Gene ID: 23660
    neXtProt AC: NX_Q9Y2L8
    UniProt: Q9Y2L8

  • Chr Location
    7q22.1; chr7:99504662-99534700 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    8
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    878
  • Tissues
    138
  • cDNA Data
    56
  • Literature Summary
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000055991 Ensembl Gene Model | MGI Sequence Detail 17189 C57BL/6J ±  kb
transcript ENSMUST00000085671 Ensembl | MGI Sequence Detail 3794 Not Applicable  
polypeptide ENSMUSP00000082814 Ensembl | MGI Sequence Detail 819 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 59
    Genomic 1
    cDNA 57
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-36103, MGI:2140811, MGI:2140846
References
more
  • Summaries
    All 40
    Developmental Gene Expression 6
    Gene Ontology 4
    Phenotypes 5
  • Earliest
    J:32420 Shannon M, et al., Comparative analysis of a conserved zinc finger gene cluster on human chromosome 19q and mouse chromosome 7. Genomics. 1996 Apr 1;33(1):112-20
  • Latest
    J:229253 Spies N, et al., Constraint and divergence of global gene expression in the mammalian embryo. Elife. 2015;4:e05538
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory