Igkv19-93 Gene Detail

Summary

• Symbol
  Igkv19-93
• Name
  immunoglobulin kappa chain variable 19-93
• Synonyms
  Igk-V38, Vx38C

• Feature Type
  gene segment
• IDs
  MGI:107617
  NCBI Gene: 692161
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:68713281-68713748 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 31.27 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  250 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_107617	gene segment	Chr6:68713281-68713764 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000134	gene segment	Chr6:68977269-68977752 (-)
A/J	MGP_AJ_G0000125	gene segment	Chr6:66042035-66042518 (-)
AKR/J	MGP_AKRJ_G0000128	gene segment	Chr6:67970034-67970517 (-)
BALB/cJ	MGP_BALBcJ_G0000120	gene segment	Chr6:66361491-66361974 (-)
C3H/HeJ	MGP_C3HHeJ_G0000131	gene segment	Chr6:116131546-116132029 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000172	gene segment	Chr6:70666155-70666638 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000131	gene segment	Chr6:68313644-68314127 (-)
CBA/J	MGP_CBAJ_G0000125	gene segment	Chr6:73443496-73443979 (-)
DBA/2J	MGP_DBA2J_G0000120	gene segment	Chr6:65656491-65656974 (-)
FVB/NJ	MGP_FVBNJ_G0000117	gene segment	Chr6:65107938-65108421 (-)
LP/J	MGP_LPJ_G0000137	gene segment	Chr6:68810570-68811053 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000131	gene segment	Chr6:77193401-77193884 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000157	gene segment	Chr6:68104463-68104946 (-)
PWK/PhJ	MGP_PWKPhJ_G0000111	gene segment	Chr6:64619734-64620217 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000089	gene segment	Chr6:67400074-67400557 (-)
WSB/EiJ	MGP_WSBEiJ_G0000129	gene segment	Chr6:68380860-68381343 (-)

Homology

• Gene Tree
  Igkv19-93
  

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000098814 (Evidence)
• NCBI Gene
  692161

Representative Sequences			Length	Strain/Species
genomic	692161	NCBI Gene Model | MGI Sequence Detail	468	C57BL/6J
transcript	M17782	GenBank | ENA | DDBJ | MGI Sequence Detail	375	C3HeB/FeJ
polypeptide	A0A0G2JFZ3	UniProt | EBI | MGI Sequence Detail	115	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR003599 Immunoglobulin subtype
  IPR050150 Immunoglobulin Variable Light Chain
  IPR013106 Immunoglobulin V-set domain

Molecular
Reagents

• All nucleic 10

  Genomic 3

  cDNA 7

Other
Accession IDs

MGD-MRK-36191

References

• Summaries
  All 11
• Earliest
  J:34872 Campbell MJ, et al., Idiotype vaccination against murine B cell lymphoma. Humoral and cellular responses elicited by tumor-derived immunoglobulin M and its molecular subunits. J Immunol. 1987 Oct 15;139(8):2825-33
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Igkv19-93:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr61262	Chr6:68713768-68713784 (-)	-28 bp