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Atp5pf Gene Detail
Summary
  • Symbol
    Atp5pf
  • Name
    ATP synthase peripheral stalk subunit F6
  • Synonyms
    Atp5j
  • Feature Type
    protein coding gene
  • IDs
    MGI:107777
    NCBI Gene: 11957
  • Alliance
    gene page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:84624754-84632495 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 16, 46.92 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    388 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107777
 protein coding gene Chr16:84624754-84632513 (-)
129S1/SvImJ MGP_129S1SvImJ_G0022969
 protein coding gene Chr16:85410043-85418910 (-)
A/J MGP_AJ_G0022937
 protein coding gene Chr16:81517654-81525418 (-)
AKR/J MGP_AKRJ_G0022907
 protein coding gene Chr16:83917708-83925467 (-)
BALB/cJ MGP_BALBcJ_G0022939
 protein coding gene Chr16:81976164-81983970 (-)
C3H/HeJ MGP_C3HHeJ_G0022701
 protein coding gene Chr16:84492818-84500582 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023386
 protein coding gene Chr16:88184515-88192274 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0020890
 protein coding gene Chr16:79464274-79472132 (-)
CAST/EiJ MGP_CASTEiJ_G0022223
 protein coding gene Chr16:84938585-84946304 (-)
CBA/J MGP_CBAJ_G0022670
 protein coding gene Chr16:91942411-91950168 (-)
DBA/2J MGP_DBA2J_G0022804
 protein coding gene Chr16:81396946-81404710 (-)
FVB/NJ MGP_FVBNJ_G0022779
 protein coding gene Chr16:80596075-80603884 (-)
LP/J MGP_LPJ_G0022873
 protein coding gene Chr16:85095459-85103218 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0022798
 protein coding gene Chr16:96402103-96409867 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0023404
 protein coding gene Chr16:84396983-84404740 (-)
PWK/PhJ MGP_PWKPhJ_G0021965
 protein coding gene Chr16:81558684-81566638 (-)
SPRET/EiJ MGP_SPRETEiJ_G0021795
 protein coding gene Chr16:83889722-83901096 (-)
WSB/EiJ MGP_WSBEiJ_G0022271
 protein coding gene Chr16:84645284-84653063 (-)



Homology
more
  • Human Ortholog
    ATP5PF, ATP synthase peripheral stalk subunit F6
  • Vertebrate Orthologs
    5
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ATP5PF, ATP synthase peripheral stalk subunit F6
  • Synonyms
    ATP5, ATP5A, ATP5J, ATPM, CF6, F6
  • Links
    NCBI Gene ID: 522
    neXtProt AC: NX_P18859
    UniProt: P18859

  • Chr Location
    21q21.3; chr21:25716503-25735673 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    19 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    22
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    954
  • Tissues
    131
  • cDNA Data
    271
  • Literature Summary
    4
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 11957 NCBI Gene Model | MGI Sequence Detail 7742 C57BL/6J ±  kb
transcript NR_184383 RefSeq | MGI Sequence Detail 1041 C57BL/6  
polypeptide P97450 UniProt | EBI | MGI Sequence Detail 108 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000004461 ATP synthase-coupling factor 6, mitochondrial
    (term hierarchy)
  • InterPro Domains
    IPR008387 ATP synthase-coupling factor 6, mitochondrial
    IPR036204 ATP synthase-coupling factor 6 superfamily, mitochondrial
  • GlyGen
    P97450 2 sites, 1 O-linked glycan (2 sites)
Molecular
Reagents
less
  • All nucleic 275
    cDNA 271
    Primer pair 3
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-36354, MGI:7469642
References
more
  • Summaries
    All 54
    Developmental Gene Expression 4
    Diseases 1
    Gene Ontology 9
    Phenotypes 19
  • Earliest
    J:44483 Brady KP, et al., Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 1997 Nov;7(11):1085-93
  • Latest
    J:346373 Liu B, et al., NPC1 is required for postnatal islet beta cell differentiation by maintaining mitochondria turnover. Theranostics. 2024;14(5):2058-2074
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory