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Raet1c Gene Detail
Summary
  • Symbol
    Raet1c
  • Name
    retinoic acid early transcript gamma
  • Synonyms
    Rae1c, RAE-1gamma
  • Feature Type
    protein coding gene
  • IDs
    MGI:109431
    NCBI Gene: 19370
  • Alliance
    gene page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:22049801-22250038 bp, + strand
    From MGI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 9.89 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    3677 from dbSNP Build 142
  • Strain Annotations
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109431
 protein coding gene Chr10:22049801-22250038 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    RAET1G, retinoic acid early transcript 1G
  • Vertebrate Orthologs
    10
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RAET1G, retinoic acid early transcript 1G
  • Synonyms
    ULBP5
  • Links
    NCBI Gene ID: 353091
    neXtProt AC: NX_Q6H3X3
    UniProt: Q6H3X3

  • Chr Location
    6q25.1; chr6:149916878-149923121 (-)  GRCh38
  • Human Ortholog
    RAET1L, retinoic acid early transcript 1L
  • Synonyms
    RAET1H, ULBP6
  • Links
    NCBI Gene ID: 154064
    neXtProt AC: NX_Q5VY80
    UniProt: Q5VY80

  • Chr Location
    6q25.1; chr6:150018334-150025532 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    18
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    21
  • Tissues
    18
  • cDNA Data
    4
  • Literature Summary
    3
  • Other Mouse Links
    GEO
Sequences &
Gene Models
less
  • All Sequences
    7
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
transcript NM_009018 RefSeq | MGI Sequence Detail 1242 Not Specified  
polypeptide O08604 UniProt | EBI | MGI Sequence Detail 253 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000014384 retinoic acid early-inducible protein 1-gamma
    (term hierarchy)
  • PDB
    4G59
  • InterPro Domains
    IPR050208 Antigen-presenting and immune regulatory MHC class I-related
    IPR011162 MHC classes I/II-like antigen recognition protein
    IPR037055 MHC class I-like antigen recognition-like superfamily
    IPR029287 Retinoic acid early-inducible protein 1
  • GlyGen
    O08604 5 sites
Molecular
Reagents
less
  • All nucleic 11
    Genomic 3
    cDNA 6
    Primer pair 2

    Microarray probesets 1
Other
Accession IDs
less
MGD-MRK-38476
References
more
  • Summaries
    All 20
    Developmental Gene Expression 3
    Gene Ontology 5
    Phenotypes 5
  • Earliest
    J:37281 Nomura M, et al., Genomic structures and characterization of Rae1 family members encoding GPI-anchored cell surface proteins and expressed predominantly in embryonic mouse brain. J Biochem. 1996 Nov;120(5):987-95
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory