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Raet1a Gene Detail
Summary
  • Symbol
    Raet1a
  • Name
    retinoic acid early transcript 1, alpha
  • Synonyms
    Rae1a, Rae1alpha, RAE-1alpha, Raet1
  • Feature Type
    protein coding gene
  • IDs
    MGI:109477
    NCBI Gene: 19368
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr10:22034508-22250038 bp, + strand
    From MGI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    4170 from dbSNP Build 142
  • Strain Annotations
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_109477
 protein coding gene Chr10:22034508-22250038 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    RAET1G, retinoic acid early transcript 1G
  • Vertebrate Orthologs
    10
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RAET1G, retinoic acid early transcript 1G
  • Synonyms
    ULBP5
  • Links
    NCBI Gene ID: 353091
    neXtProt AC: NX_Q6H3X3
    UniProt: Q6H3X3

  • Chr Location
    6q25.1; chr6:149916878-149923121 (-)  GRCh38
  • Human Ortholog
    RAET1L, retinoic acid early transcript 1L
  • Synonyms
    RAET1H, ULBP6
  • Links
    NCBI Gene ID: 154064
    neXtProt AC: NX_Q5VY80
    UniProt: Q5VY80

  • Chr Location
    6q25.1; chr6:150018334-150025532 (-)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    21
  • Tissues
    18
  • cDNA Data
    11
  • Literature Summary
    4
  • Other Mouse Links
    GEO
Sequences &
Gene Models
less
  • All Sequences
    6
  • RefSeq
    2
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
transcript NM_009016 RefSeq | MGI Sequence Detail 1546 Not Specified  
polypeptide O08602 UniProt | EBI | MGI Sequence Detail 253 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000014382 retinoic acid early-inducible protein 1-alpha
    (term hierarchy)
  • InterPro Domains
    IPR050208 Antigen-presenting and immune regulatory MHC class I-related
    IPR011162 MHC classes I/II-like antigen recognition protein
    IPR037055 MHC class I-like antigen recognition-like superfamily
    IPR029287 Retinoic acid early-inducible protein 1
  • GlyGen
    O08602 5 sites
Molecular
Reagents
less
  • All nucleic 19
    Genomic 4
    cDNA 13
    Primer pair 2

    Microarray probesets 1
Other
Accession IDs
less
MGD-MRK-24122, MGD-MRK-39476
References
more
  • Summaries
    All 16
    Developmental Gene Expression 4
    Gene Ontology 5
  • Earliest
    J:19568 Nomura M, et al., Isolation and characterization of retinoic acid-inducible cDNA clones in F9 cells: one of the early inducible clones encodes a novel protein sharing several highly homologous regions with a Drosophila polyhomeotic protein. Differentiation. 1994 Jun;57(1):39-50
  • Latest
    J:100668 Xie X, et al., Pathways participating in activation of mouse uterine natural killer cells during pregnancy. Biol Reprod. 2005 Sep;73(3):510-8
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory