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Ercc6 Gene Detail
Summary
  • Symbol
    Ercc6
  • Name
    excision repair cross-complementing rodent repair deficiency, complementation group 6
  • Synonyms
    C130058G22Rik, CSB, CS group B correcting gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:1100494
    NCBI Gene: 319955
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:32235478-32302947 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 19.40 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1448 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1100494
 protein coding gene Chr14:32235248-32302947 (+)
129S1/SvImJ MGP_129S1SvImJ_G0021147
 protein coding gene Chr14:25767577-25831113 (+)
A/J MGP_AJ_G0021095
 protein coding gene Chr14:24781610-24845153 (+)
AKR/J MGP_AKRJ_G0021072
 protein coding gene Chr14:25939087-26005762 (+)
BALB/cJ MGP_BALBcJ_G0021099
 protein coding gene Chr14:24964316-25027894 (+)
C3H/HeJ MGP_C3HHeJ_G0020882
 protein coding gene Chr14:25811354-25878834 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021531
 protein coding gene Chr14:26792885-26856416 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0019093
 protein coding gene Chr14:24847385-24915299 (+)
CAST/EiJ MGP_CASTEiJ_G0020407
 protein coding gene Chr14:25615766-25684165 (+)
CBA/J MGP_CBAJ_G0020849
 protein coding gene Chr14:27787810-27858439 (+)
DBA/2J MGP_DBA2J_G0020971
 protein coding gene Chr14:24809028-24872554 (+)
FVB/NJ MGP_FVBNJ_G0020955
 protein coding gene Chr14:24774099-24841775 (+)
LP/J MGP_LPJ_G0021040
 protein coding gene Chr14:26084055-26150740 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020981
 protein coding gene Chr14:27004119-27067675 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021564
 protein coding gene Chr14:25724456-25789559 (+)
PWK/PhJ MGP_PWKPhJ_G0020155
 protein coding gene Chr14:24294559-24364096 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019979
 protein coding gene Chr14:25336858-25408576 (+)
WSB/EiJ MGP_WSBEiJ_G0020462
 protein coding gene Chr14:25787925-25856471 (+)



Homology
more
  • Human Ortholog
    ERCC6, ERCC excision repair 6, chromatin remodeling factor
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ERCC6, ERCC excision repair 6, chromatin remodeling factor
  • Synonyms
    ARMD5, CKN2, COFS, COFS1, CSB, CSB-PGBD3, POF11, RAD26, UVSS1
  • Links
    NCBI Gene ID: 2074
    neXtProt AC: NX_P0DP91, NX_Q03468
    UniProt: P0DP91, Q03468

  • Chr Location
    10q11.23; chr10:49434881-49539538 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Ercc6 mouse models; 14 with human ERCC6 associations

Human Disease Mouse Models
      
IDs
 View 4 models
      
IDs
IDs
IDs
IDs
IDs
IDs
IDs
IDs
IDs
IDs
IDs
IDs
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    3 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotypes from 1 allele in 4 genetic backgrounds
    63 phenotypes from multigenic genotypes
    11 images
    64 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous mutant mice exhibit UV sensitivity, inactivation of transcription-coupled repair, increased incidence of induced skin and eye tumors, circling behavior, impaired coordination and lower body weight.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    93
  • GO References
    28
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    730
  • Tissues
    15
  • cDNA Data
    12
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000054051 Ensembl Gene Model | MGI Sequence Detail 67470 C57BL/6J ±  kb
    transcript ENSMUST00000066807 Ensembl | MGI Sequence Detail 8423 Not Applicable  
    polypeptide ENSMUSP00000066256 Ensembl | MGI Sequence Detail 1481 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 14
      Genomic 2
      cDNA 12

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:2443053
    References
    more
    • Summaries
      All 103
      Developmental Gene Expression 1
      Diseases 3
      Gene Ontology 28
      Phenotypes 64
    • Earliest
      J:40211 van der Horst GT, et al., Defective transcription-coupled repair in Cockayne syndrome B mice is associated with skin cancer predisposition. Cell. 1997 May 2;89(3):425-35
    • Latest
      J:326214 Mulderrig L, et al., Aldehyde-driven transcriptional stress triggers an anorexic DNA damage response. Nature. 2021 Dec;600(7887):158-163
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory