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Patj Gene Detail
Summary
  • Symbol
    Patj
  • Name
    PATJ, crumbs cell polarity complex component
  • Synonyms
    Cipp, Inadl
  • Feature Type
    protein coding gene
  • IDs
    MGI:1277960
    NCBI Gene: 12695
  • Alliance
    gene page
  • Transcription Start Sites
    22 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:98284022-98607840 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 45.60 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    9365 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1277960
 protein coding gene Chr4:98283803-98607840 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028472
 protein coding gene Chr4:98557061-98891361 (+)
A/J MGP_AJ_G0028435
 protein coding gene Chr4:95127674-95456190 (+)
AKR/J MGP_AKRJ_G0028382
 protein coding gene Chr4:97433415-97772770 (+)
BALB/cJ MGP_BALBcJ_G0028453
 protein coding gene Chr4:95375144-95701001 (+)
C3H/HeJ MGP_C3HHeJ_G0028166
 protein coding gene Chr4:98230031-98568195 (+)
C57BL/6NJ MGP_C57BL6NJ_G0028892
 protein coding gene Chr4:102331280-102665621 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026184
 protein coding gene Chr4:90519868-90834532 (+)
CAST/EiJ MGP_CASTEiJ_G0027606
 protein coding gene Chr4:96025944-96353305 (+)
CBA/J MGP_CBAJ_G0028135
 protein coding gene Chr4:105409624-105765718 (+)
DBA/2J MGP_DBA2J_G0028285
 protein coding gene Chr4:94885962-95206599 (+)
FVB/NJ MGP_FVBNJ_G0028252
 protein coding gene Chr4:93738203-94053182 (+)
LP/J MGP_LPJ_G0028385
 protein coding gene Chr4:98873257-99208528 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028280
 protein coding gene Chr4:111192641-111533203 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0028930
 protein coding gene Chr4:97683488-98019306 (+)
PWK/PhJ MGP_PWKPhJ_G0027331
 protein coding gene Chr4:93028055-93347848 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027152
 protein coding gene Chr4:95139424-95459413 (+)
WSB/EiJ MGP_WSBEiJ_G0027684
 protein coding gene Chr4:97809379-98144121 (+)



Homology
more
  • Human Ortholog
    PATJ, PATJ crumbs cell polarity complex component
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PATJ, PATJ crumbs cell polarity complex component
  • Synonyms
    Cipp, hINADL, INADL, InaD-like
  • Links
    NCBI Gene ID: 10207
    UniProt: Q8NI35

  • Chr Location
    1p31.3; chr1:61742477-62178675 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    32
  • GO References
    15
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    750
  • Tissues
    26
  • cDNA Data
    85
  • Literature Summary
    13
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000061859 Ensembl Gene Model | MGI Sequence Detail 323819 C57BL/6J ±  kb
    transcript ENSMUST00000238306 Ensembl | MGI Sequence Detail 7416 Not Applicable  
    polypeptide ENSMUSP00000158719 Ensembl | MGI Sequence Detail 1858 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 89
      cDNA 88
      Primer pair 1

      Microarray probesets 6
    References
    more
    • Summaries
      All 61
      Developmental Gene Expression 13
      Gene Ontology 15
      Phenotypes 13
    • Earliest
      J:48437 Kurschner C, et al., CIPP, a novel multivalent PDZ domain protein, selectively interacts with Kir4.0 family members, NMDA receptor subunits, neurexins, and neuroligins. Mol Cell Neurosci. 1998 Jun;11(3):161-72
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory