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Cdkl5 Gene Detail
Summary
  • Symbol
    Cdkl5
  • Name
    cyclin dependent kinase like 5
  • Synonyms
    Stk9
  • Feature Type
    protein coding gene
  • IDs
    MGI:1278336
    NCBI Gene: 382253
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:159567241-159777673 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 73.95 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    3391 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    2
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1278336
 protein coding gene ChrX:159554919-159777700 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036234
 protein coding gene ChrX:158700043-158930689 (-)
A/J MGP_AJ_G0036204
 protein coding gene ChrX:157957644-158187921 (-)
AKR/J MGP_AKRJ_G0036132
 protein coding gene ChrX:162972036-163204184 (-)
BALB/cJ MGP_BALBcJ_G0036197
 protein coding gene ChrX:156032502-156256512 (-)
C3H/HeJ MGP_C3HHeJ_G0035903
 protein coding gene ChrX:159101654-159331582 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036719
 protein coding gene ChrX:163427721-163655906 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033541
 protein coding gene ChrX:149180471-149403114 (-)
CAST/EiJ MGP_CASTEiJ_G0035192
 protein coding gene ChrX:138110860-138346195 (-)
CBA/J MGP_CBAJ_G0035878
 protein coding gene ChrX:168079245-168330325 (-)
DBA/2J MGP_DBA2J_G0036044
 protein coding gene ChrX:156916399-157139582 (-)
FVB/NJ MGP_FVBNJ_G0035975
 protein coding gene ChrX:156032791-156255276 (-)
LP/J MGP_LPJ_G0036129
 protein coding gene ChrX:159881116-160108268 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0036007
 protein coding gene ChrX:176792547-177040797 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036760
 protein coding gene ChrX:158253019-158479386 (-)
PWK/PhJ MGP_PWKPhJ_G0034890
 protein coding gene ChrX:134963693-135191483 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034711
 protein coding gene ChrX:138524986-138759766 (-)
WSB/EiJ MGP_WSBEiJ_G0035327
 protein coding gene ChrX:156222357-156450753 (-)



Homology
more
  • Human Ortholog
    CDKL5, cyclin dependent kinase like 5
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CDKL5, cyclin dependent kinase like 5
  • Synonyms
    CFAP247, DEE2, EIEE2, ISSX, STK9
  • Links
    NCBI Gene ID: 6792
    neXtProt AC: NX_O76039
    UniProt: O76039

  • Chr Location
    Xp22.13; chrX:18425583-18653629 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with Cdkl5 mouse models; 4 with human CDKL5 associations

Human Disease Mouse Models
      
IDs
 View 2 models
      
IDs
IDs
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotypes from 5 alleles in 7 genetic backgrounds
    2 images
    57 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Male mice hemizygous for a knock-out allele exhibit hyperactivity, impaired coordination, decreased anxiety-related response, limb grasping, social withdrawal, and impaired nesting, conditioned behavior learning and auditory-evoked event-related potentials.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    41
  • GO References
    11
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    864
  • Tissues
    49
  • cDNA Data
    10
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 382253 NCBI Gene Model | MGI Sequence Detail 210433 C57BL/6J ±  kb
    transcript NM_001421523 RefSeq | MGI Sequence Detail 10050 ZRU/MplStud  
    polypeptide Q3UTQ8 UniProt | EBI | MGI Sequence Detail 938 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 17
      cDNA 11
      Primer pair 6

      Microarray probesets 1
    Other
    Accession IDs
    less
    MGI:2448589
    References
    more
    • Summaries
      All 94
      Developmental Gene Expression 6
      Diseases 1
      Gene Ontology 11
      Phenotypes 57
    • Earliest
      J:46359 Blair HJ, et al., Mouse mutants carrying deletions that remove the genes mutated in Coffin-Lowry syndrome and lactic acidosis. Hum Mol Genet. 1998 Mar;7(3):549-55
    • Latest
      J:346011 Thinwa JW, et al., CDKL5 regulates p62-mediated selective autophagy and confers protection against neurotropic viruses. J Clin Invest. 2024 Jan 2;134(1)
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory