About   Help   FAQ
Rtf1 Gene Detail
Summary
  • Symbol
    Rtf1
  • Name
    RTF1, Paf1/RNA polymerase II complex component
  • Synonyms
    2900005O08Rik, 6530416A09Rik, Gtl7
  • Feature Type
    protein coding gene
  • IDs
    MGI:1309480
    NCBI Gene: 76246
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:119505549-119565888 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 59.97 cM, cytoband E5
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1275 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1309480
 protein coding gene Chr2:119505549-119565888 (+)
129S1/SvImJ MGP_129S1SvImJ_G0026349
 protein coding gene Chr2:122498778-122562114 (+)
A/J MGP_AJ_G0026310
 protein coding gene Chr2:117479739-117542304 (+)
AKR/J MGP_AKRJ_G0026289
 protein coding gene Chr2:120764883-120827034 (+)
BALB/cJ MGP_BALBcJ_G0026323
 protein coding gene Chr2:117724377-117785709 (+)
C3H/HeJ MGP_C3HHeJ_G0026069
 protein coding gene Chr2:121228033-121287900 (+)
C57BL/6NJ MGP_C57BL6NJ_G0026770
 protein coding gene Chr2:126482678-126552732 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0024150
 protein coding gene Chr2:112512970-112572295 (+)
CAST/EiJ MGP_CASTEiJ_G0025531
 protein coding gene Chr2:121544870-121608986 (+)
CBA/J MGP_CBAJ_G0026045
 protein coding gene Chr2:130927099-130994997 (+)
DBA/2J MGP_DBA2J_G0026184
 protein coding gene Chr2:116880148-116939934 (+)
FVB/NJ MGP_FVBNJ_G0026146
 protein coding gene Chr2:115710647-115772314 (+)
LP/J MGP_LPJ_G0026285
 protein coding gene Chr2:122764162-122830120 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0026165
 protein coding gene Chr2:135251802-135318170 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0026825
 protein coding gene Chr2:120879195-120946747 (+)
PWK/PhJ MGP_PWKPhJ_G0025267
 protein coding gene Chr2:116463452-116525459 (+)
SPRET/EiJ MGP_SPRETEiJ_G0025066
 protein coding gene Chr2:120065322-120132617 (+)
WSB/EiJ MGP_WSBEiJ_G0025600
 protein coding gene Chr2:121715312-121779855 (+)



Homology
more
  • Human Ortholog
    RTF1, RTF1 homolog, Paf1/RNA polymerase II complex component
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RTF1, RTF1 homolog, Paf1/RNA polymerase II complex component
  • Synonyms
    GTL7, KIAA0252
  • Links
    NCBI Gene ID: 23168
    neXtProt AC: NX_Q92541
    UniProt: Q92541

  • Chr Location
    15q15.1; chr15:41408408-41483563 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with Rtf1 mouse models

Human Disease Mouse Models
      
IDs
 View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    16 phenotypes from 2 alleles in 2 genetic backgrounds
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    719
  • Tissues
    9
  • cDNA Data
    102
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 76246 NCBI Gene Model | MGI Sequence Detail 60340 C57BL/6J ±  kb
    transcript NM_030112 RefSeq | MGI Sequence Detail 4680 C57BL/6  
    polypeptide A2AQ19 UniProt | EBI | MGI Sequence Detail 715 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 103
      cDNA 103

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1923496, MGI:1925759, MGI:2139096, MGI:2139215, MGI:2139393
    References
    more
    • Summaries
      All 48
      Developmental Gene Expression 2
      Diseases 1
      Gene Ontology 8
      Phenotypes 16
    • Earliest
      J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory