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Chd3 Gene Detail
Summary
  • Symbol
    Chd3
  • Name
    chromodomain helicase DNA binding protein 3
  • Synonyms
    2600010P09Rik, Chd7, Mi-2 alpha, Prp7, Prp9-1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1344395
    NCBI Gene: 216848
  • Alliance
    gene page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:69234099-69260232 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 42.53 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    462 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1344395
 protein coding gene Chr11:69234099-69260325 (-)
129S1/SvImJ MGP_129S1SvImJ_G0018528
 protein coding gene Chr11:69767444-69794879 (-)
A/J MGP_AJ_G0018497
 protein coding gene Chr11:67141955-67168079 (-)
AKR/J MGP_AKRJ_G0018466
 protein coding gene Chr11:69151447-69177901 (-)
BALB/cJ MGP_BALBcJ_G0018468
 protein coding gene Chr11:67460713-67487429 (-)
C3H/HeJ MGP_C3HHeJ_G0018281
 protein coding gene Chr11:69165551-69191635 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018920
 protein coding gene Chr11:71884049-71910455 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0016564
 protein coding gene Chr11:64071917-64098725 (-)
CAST/EiJ MGP_CASTEiJ_G0017837
 protein coding gene Chr11:69406270-69432246 (-)
CBA/J MGP_CBAJ_G0018255
 protein coding gene Chr11:75096004-75124178 (-)
DBA/2J MGP_DBA2J_G0018364
 protein coding gene Chr11:66736027-66762434 (-)
FVB/NJ MGP_FVBNJ_G0018354
 protein coding gene Chr11:66360250-66387304 (-)
LP/J MGP_LPJ_G0018435
 protein coding gene Chr11:70339052-70393985 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0018377
 protein coding gene Chr11:75713340-75740314 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018961
 protein coding gene Chr11:69400188-69426227 (-)
PWK/PhJ MGP_PWKPhJ_G0017612
 protein coding gene Chr11:67375564-67430855 (-)
SPRET/EiJ MGP_SPRETEiJ_G0017400
 protein coding gene Chr11:69222607-69248651 (-)
WSB/EiJ MGP_WSBEiJ_G0017891
 protein coding gene Chr11:69080139-69108573 (-)



Homology
more
  • Human Ortholog
    CHD3, chromodomain helicase DNA binding protein 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CHD3, chromodomain helicase DNA binding protein 3
  • Synonyms
    Mi-2a, Mi2-ALPHA, SNIBCPS, ZFH
  • Links
    NCBI Gene ID: 1107
    neXtProt AC: NX_Q12873
    UniProt: Q12873

  • Chr Location
    17p13.1; chr17:7884796-7912760 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 2 alleles in 3 genetic backgrounds
    3 phenotypes from multigenic genotypes
    16 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous knockout leads to increased embryonic lethality.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    28
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    754
  • Tissues
    36
  • cDNA Data
    252
  • Literature Summary
    12
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000018474 Ensembl Gene Model | MGI Sequence Detail 26134 C57BL/6J ±  kb
    transcript ENSMUST00000108661 Ensembl | MGI Sequence Detail 7261 Not Applicable  
    polypeptide ENSMUSP00000104301 Ensembl | MGI Sequence Detail 2055 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 253
      cDNA 252
      Primer pair 1

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGI:1919700, MGI:1934942
    References
    more
    • Summaries
      All 54
      Developmental Gene Expression 12
      Gene Ontology 3
      Phenotypes 16
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:353544 de Castro RO, et al., Mouse Chd4-NURD is required for neonatal spermatogonia survival and normal gonad development. Epigenetics Chromatin. 2024;15(1):16
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory