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Abcg5 Gene Detail
Summary
  • Symbol
    Abcg5
  • Name
    ATP binding cassette subfamily G member 5
  • Synonyms
    cmp, Sterolin-1, tac, trac
  • Feature Type
    protein coding gene
  • IDs
    MGI:1351659
    NCBI Gene: 27409
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
  • Candidate for QTL
    5 QTL
Location &
Maps
more
  • Sequence Map
    Chr17:84965662-84990439 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 55.02 cM
  • Mapping Data
    8 experiments
Strain
Comparison
more
  • SNPs within 2kb
    913 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1351659
 protein coding gene Chr17:84965602-84990439 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024081
 protein coding gene Chr17:87835898-87863923 (-)
A/J MGP_AJ_G0024040
 protein coding gene Chr17:85046982-85071702 (-)
AKR/J MGP_AKRJ_G0024009
 protein coding gene Chr17:86437203-86464078 (-)
BALB/cJ MGP_BALBcJ_G0024041
 protein coding gene Chr17:84897979-84923030 (-)
C3H/HeJ MGP_C3HHeJ_G0023806
 protein coding gene Chr17:87283992-87308649 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024486
 protein coding gene Chr17:90951431-90976891 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021925
 protein coding gene Chr17:80252603-80276514 (-)
CAST/EiJ MGP_CASTEiJ_G0023285
 protein coding gene Chr17:88073910-88104901 (-)
CBA/J MGP_CBAJ_G0023780
 protein coding gene Chr17:94701786-94733325 (-)
DBA/2J MGP_DBA2J_G0023908
 protein coding gene Chr17:83527691-83552439 (-)
FVB/NJ MGP_FVBNJ_G0023874
 protein coding gene Chr17:83010290-83036829 (-)
LP/J MGP_LPJ_G0023992
 protein coding gene Chr17:88600103-88626335 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023902
 protein coding gene Chr17:94783352-94809285 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024531
 protein coding gene Chr17:86922746-86953731 (-)
PWK/PhJ MGP_PWKPhJ_G0023030
 protein coding gene Chr17:83100649-83127583 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022841
 protein coding gene Chr17:83735304-83760943 (-)
WSB/EiJ MGP_WSBEiJ_G0023351
 protein coding gene Chr17:87794325-87819341 (-)



Homology
more
  • Human Ortholog
    ABCG5, ATP binding cassette subfamily G member 5
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ABCG5, ATP binding cassette subfamily G member 5
  • Synonyms
    STSL, STSL2
  • Links
    NCBI Gene ID: 64240
    neXtProt AC: NX_Q9H222
    UniProt: Q9H222

  • Chr Location
    2p21; chr2:43806211-43839231 (-)  GRCh38
Human Diseases
more
  • Diseases
    3 with human ABCG5 associations

Human Disease Mouse Models
      
IDs
IDs
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    45 phenotypes from 2 alleles in 3 genetic backgrounds
    12 phenotypes from multigenic genotypes
    32 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygotes for a null allele show hyperabsorption of dietary plant sterols and sitosterolemia. Spontaneous mutants are small, infertile and hunched and display anemia, leukopenia, macrothrombocytopenia, other hematologic defects, cardiomyopathy, high plasma phytosterol levels and premature death.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    47
  • GO References
    11
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    845
  • Tissues
    100
  • cDNA Data
    17
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000040505 Ensembl Gene Model | MGI Sequence Detail 24778 C57BL/6J ±  kb
    transcript ENSMUST00000066175 Ensembl | MGI Sequence Detail 2351 Not Applicable  
    polypeptide ENSMUSP00000069495 Ensembl | MGI Sequence Detail 652 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 18
      cDNA 17
      Primer pair 1

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGI:2147047, MGI:2156894
    References
    more
    • Summaries
      All 83
      Developmental Gene Expression 4
      Gene Ontology 11
      Phenotypes 32
    • Earliest
      J:72524 Lu K, et al., Two genes that map to the STSL locus cause sitosterolemia: genomic structure and spectrum of mutations involving sterolin-1 and sterolin-2, encoded by ABCG5 and ABCG8, respectively. Am J Hum Genet. 2001 Aug;69(2):278-90
    • Latest
      J:358603 Yamanashi Y, et al., Dietary phytosterols induce infertility in female mice via epigenomic modulations. Commun Biol. 2024 Nov 19;7(1):1535
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory