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Rab11a Gene Detail
Summary
  • Symbol
    Rab11a
  • Name
    RAB11A, member RAS oncogene family
  • Feature Type
    protein coding gene
  • IDs
    MGI:1858202
    NCBI Gene: 53869
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:64622582-64645038 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 34.87 cM, cytoband C
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    404 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1858202
 protein coding gene Chr9:64622581-64645040 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034943
 protein coding gene Chr9:64396600-64419081 (-)
A/J MGP_AJ_G0034923
 protein coding gene Chr9:62240306-62261519 (-)
AKR/J MGP_AKRJ_G0034853
 protein coding gene Chr9:63689976-63711224 (-)
BALB/cJ MGP_BALBcJ_G0034916
 protein coding gene Chr9:61965911-61987586 (-)
C3H/HeJ MGP_C3HHeJ_G0034626
 protein coding gene Chr9:64218969-64241270 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035435
 protein coding gene Chr9:66158910-66180158 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032346
 protein coding gene Chr9:61874938-61901169 (-)
CAST/EiJ MGP_CASTEiJ_G0033947
 protein coding gene Chr9:64385476-64413319 (-)
CBA/J MGP_CBAJ_G0034597
 protein coding gene Chr9:68440699-68464818 (-)
DBA/2J MGP_DBA2J_G0034756
 protein coding gene Chr9:62015787-62042155 (-)
FVB/NJ MGP_FVBNJ_G0034698
 protein coding gene Chr9:61320417-61346729 (-)
LP/J MGP_LPJ_G0034839
 protein coding gene Chr9:64681572-64704487 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034740
 protein coding gene Chr9:69714631-69742088 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035457
 protein coding gene Chr9:63800785-63827147 (-)
PWK/PhJ MGP_PWKPhJ_G0033651
 protein coding gene Chr9:62172453-62198991 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033485
 protein coding gene Chr9:64063891-64090064 (-)
WSB/EiJ MGP_WSBEiJ_G0034060
 protein coding gene Chr9:63696812-63721053 (-)



Homology
more
  • Human Ortholog
    RAB11A, RAB11A, member RAS oncogene family
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RAB11A, RAB11A, member RAS oncogene family
  • Synonyms
    YL8
  • Links
    NCBI Gene ID: 8766
    neXtProt AC: NX_P62491
    UniProt: P62491

  • Chr Location
    15q22.31; chr15:65726054-65891989 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    34 phenotypes from 2 alleles in 4 genetic backgrounds
    3 phenotypes from multigenic genotypes
    1 images
    26 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit decreased embryo size, a rudimentary egg cylinder, failure of primitive streak formation, absent primitive node and head folds, failure to gastrulate, and complete lethality prior to organogenesis.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    120
  • GO References
    22
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    756
  • Tissues
    32
  • cDNA Data
    137
  • Literature Summary
    23
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 53869 NCBI Gene Model | MGI Sequence Detail 22457 C57BL/6J ±  kb
    transcript NM_017382 RefSeq | MGI Sequence Detail 2333 C57BL/6  
    polypeptide P62492 UniProt | EBI | MGI Sequence Detail 216 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 140
      Genomic 1
      cDNA 137
      Primer pair 2

      Microarray probesets 5
    References
    more
    • Summaries
      All 106
      Developmental Gene Expression 23
      Gene Ontology 22
      Phenotypes 26
    • Earliest
      J:61077 Bhartur SG, et al., Genomic structure of murine Rab11 family members. Biochem Biophys Res Commun. 2000 Mar 16;269(2):611-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory