Cd164 MGI Mouse Gene Detail - MGI:1859568

Symbol

Cd164
Name

CD164 antigen
Synonyms

A115, A24, MGC-24

Feature Type

protein coding gene
IDs

MGI:1859568
NCBI Gene: 53599
Alliance

gene page
Transcription Start Sites

14 TSS

Sequence Map

Chr10:41395496-41407038 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 10, 22.46 cM
Mapping Data

3 experiments

SNPs within 2kb

210 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1859568	protein coding gene	Chr10:41395410-41407044 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0017176	protein coding gene	Chr10:40162302-40173894 (+)
A/J	MGP_AJ_G0017153	protein coding gene	Chr10:39044047-39055655 (+)
AKR/J	MGP_AKRJ_G0017113	protein coding gene	Chr10:39633251-39646291 (+)
BALB/cJ	MGP_BALBcJ_G0017115	protein coding gene	Chr10:39112630-39124534 (+)
C3H/HeJ	MGP_C3HHeJ_G0016936	protein coding gene	Chr10:39956165-39968550 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0017574	protein coding gene	Chr10:41388050-41399672 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0015270	protein coding gene	Chr10:36984164-36994889 (+)
CAST/EiJ	MGP_CASTEiJ_G0016515	protein coding gene	Chr10:40149798-40161295 (+)
CBA/J	MGP_CBAJ_G0016910	protein coding gene	Chr10:43275963-43295058 (+)
DBA/2J	MGP_DBA2J_G0017015	protein coding gene	Chr10:38548804-38560409 (+)
FVB/NJ	MGP_FVBNJ_G0017010	protein coding gene	Chr10:38047837-38059760 (+)
LP/J	MGP_LPJ_G0017092	protein coding gene	Chr10:40157473-40170285 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017040	protein coding gene	Chr10:44094172-44105813 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0017611	protein coding gene	Chr10:39610907-39622475 (+)
PWK/PhJ	MGP_PWKPhJ_G0016295	protein coding gene	Chr10:38425166-38437525 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0016079	protein coding gene	Chr10:39427962-39439506 (+)
WSB/EiJ	MGP_WSBEiJ_G0016578	protein coding gene	Chr10:39937193-39948821 (+)

Human Ortholog

CD164, CD164 molecule

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

CD164, CD164 molecule
Synonyms

DFNA66, endolyn, MGC-24, MGC-24v, MUC-24
Links

HGNC:1632

NCBI Gene ID: 8763

neXtProt AC: NX_Q04900

UniProt: Q04900
Chr Location

6q21; chr6:109366514-109382467 (-) GRCh38

MGI Vertebrate Homology

Cd164 stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: CD164
Gene Tree

Cd164

Diseases

1 with human CD164 associations

				Human Disease	Mouse Models
				autosomal dominant nonsyndromic deafness 66 IDs autosomal dominant nonsyndromic deafness 66 DOID:0110587 ICD10CM:H90.3 OMIM:616969

Click on a disease name to see all genes associated with that disease.

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Phenotype Summary

14 phenotype references

All Mutations and Alleles

10
Chemically induced (other)

1
Endonuclease-mediated

5
Gene trapped

2
Radiation induced

1
Targeted

1
Genomic Mutations

2 involving Cd164
Incidental Mutations

APF
Find Mice (IMSR)

14 strains or lines available

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All GO Annotations

14
GO References

8

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

920
Tissues

40
cDNA Data

418
Literature Summary

8

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

GEISHA CD164

Xenbase cd164

ZFIN cd164

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All Sequences

52
RefSeq

2
UniProt

4
CCDS

CCDS23806.1

Ensembl

ENSMUSG00000019818 (Evidence)
NCBI Gene

53599

			Length	Strain/Species	Flank
genomic	53599	NCBI Gene Model \| MGI Sequence Detail	11543	C57BL/6J	± kb
transcript	NM_016898	RefSeq \| MGI Sequence Detail	2830	ZRU/MplStud
polypeptide	Q9R0L9	UniProt \| EBI \| MGI Sequence Detail	197	Not Applicable

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UniProt

4 Sequences
Protein Ontology

PR:000001922 sialomucin core protein 24

(term hierarchy)
InterPro Domains

IPR007947 CD164-related protein
GlyGen

Q9R0L9 9 sites, 4 N-linked glycans (4 sites)

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All nucleic 422

cDNA 420

Primer pair 1

Other 1

Microarray probesets 4

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MGI:2143502, MGI:2143853

Summaries

All 52

Developmental Gene Expression 8

Gene Ontology 8

Phenotypes 14
Earliest

J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Latest

J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;

TSS for Cd164:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93048	Chr10:41395432-41395443 (+)	-58 bp
Tssr93049	Chr10:41395451-41395476 (+)	-32 bp
Tssr93050	Chr10:41395489-41395512 (+)	5 bp
Tssr93051	Chr10:41395726-41395739 (+)	237 bp
Tssr93052	Chr10:41395813-41395829 (+)	325 bp
Tssr93053	Chr10:41395846-41395855 (+)	355 bp
Tssr93054	Chr10:41395870-41395923 (+)	401 bp
Tssr93055	Chr10:41395944-41395957 (+)	455 bp
Tssr93056	Chr10:41395976-41395985 (+)	485 bp
Tssr93057	Chr10:41395986-41395996 (+)	495 bp
Tssr93058	Chr10:41396525-41396530 (+)	1,032 bp
Tssr93059	Chr10:41402814-41402850 (+)	7,336 bp
Tssr93060	Chr10:41404744-41404755 (+)	9,254 bp
Tssr93061	Chr10:41405542-41405556 (+)	10,053 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/05/2024 MGI 6.24