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Rnf5 Gene Detail
Summary
  • Symbol
    Rnf5
  • Name
    ring finger protein 5
  • Synonyms
    2410131O05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1860076
    NCBI Gene: 54197
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:34820073-34822535 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 18.18 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1860076
 protein coding gene Chr17:34820065-34822664 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023580
 protein coding gene Chr17:34677727-34682392 (-)
A/J MGP_AJ_G0023542
 protein coding gene Chr17:33499440-33502002 (-)
AKR/J MGP_AKRJ_G0023507
 protein coding gene Chr17:33915997-33918559 (-)
BALB/cJ MGP_BALBcJ_G0023546
 protein coding gene Chr17:33646858-33649417 (-)
C3H/HeJ MGP_C3HHeJ_G0023306
 protein coding gene Chr17:34310355-34312917 (-)
C57BL/6NJ MGP_C57BL6NJ_G0023986
 protein coding gene Chr17:35995533-35998132 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021465
 protein coding gene Chr17:31387554-31391485 (-)
CAST/EiJ MGP_CASTEiJ_G0022806
 protein coding gene Chr17:34382039-34384624 (-)
CBA/J MGP_CBAJ_G0023284
 protein coding gene Chr17:37529442-37532022 (-)
DBA/2J MGP_DBA2J_G0023412
 protein coding gene Chr17:32789363-32791922 (-)
FVB/NJ MGP_FVBNJ_G0023379
 protein coding gene Chr17:32692101-32694674 (-)
LP/J MGP_LPJ_G0023490
 protein coding gene Chr17:34950868-34953429 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023402
 protein coding gene Chr17:36414432-36416991 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024029
 protein coding gene Chr17:34221165-34229210 (-)
PWK/PhJ MGP_PWKPhJ_G0022554
 protein coding gene Chr17:31718163-31720800 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022371
 protein coding gene Chr17:32210772-32214017 (-)
WSB/EiJ MGP_WSBEiJ_G0022867
 protein coding gene Chr17:34314699-34317266 (-)



Homology
more
  • Human Ortholog
    RNF5, ring finger protein 5
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RNF5, ring finger protein 5
  • Synonyms
    RING5, RMA1
  • Links
    NCBI Gene ID: 6048
    neXtProt AC: NX_Q99942
    UniProt: Q99942

  • Chr Location
    6p21.32; chr6:32178405-32180793 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 2 alleles in 2 genetic backgrounds
    18 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
When subjected to muscle damage by cardiotoxin treatment, mice homozygous for a targeted null mutation display attenuated muscle regeneration associated with a delayed ER stress response.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    32
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    759
  • Tissues
    52
  • cDNA Data
    98
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 54197 NCBI Gene Model | MGI Sequence Detail 2463 C57BL/6J ±  kb
    transcript NM_019403 RefSeq | MGI Sequence Detail 1101 ZRU/MplStud  
    polypeptide O35445 UniProt | EBI | MGI Sequence Detail 180 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 99
      Genomic 1
      cDNA 98

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:1915211, MGI:2146742
    References
    more
    • Summaries
      All 49
      Developmental Gene Expression 4
      Gene Ontology 8
      Phenotypes 18
    • Earliest
      J:58544 Trachtulec Z, et al., Synteny of orthologous genes conserved in mammals, snake, fly, nematode, and fission yeast. Mamm Genome. 2001 Mar;12(3):227-31
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory