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Or13j1 Gene Detail
Summary
  • Symbol
    Or13j1
  • Name
    olfactory receptor family 13 subfamily J member 1
  • Synonyms
    GA_x6K02T2N78B-16230286-16231224, mOR17, MOR262-4, Olfr71
  • Feature Type
    protein coding gene
  • IDs
    MGI:1860080
    NCBI Gene: 56015
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr4:43705628-43706566 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 23.05 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    127 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1860080
 protein coding gene Chr4:43704562-43710255 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028223
 protein coding gene Chr4:41838309-41847558 (-)
A/J MGP_AJ_G0028179
 protein coding gene Chr4:40349373-40353979 (-)
AKR/J MGP_AKRJ_G0028131
 protein coding gene Chr4:41261228-41265848 (-)
BALB/cJ MGP_BALBcJ_G0028199
 protein coding gene Chr4:40439120-40443723 (-)
C3H/HeJ MGP_C3HHeJ_G0027921
 protein coding gene Chr4:41898943-41903546 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028640
 protein coding gene Chr4:43400086-43404689 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025952
 protein coding gene Chr4:37796271-37800949 (-)
CAST/EiJ MGP_CASTEiJ_G0027361
 protein coding gene Chr4:41408415-41413053 (-)
CBA/J MGP_CBAJ_G0027887
 protein coding gene Chr4:44730500-44735113 (-)
DBA/2J MGP_DBA2J_G0028036
 protein coding gene Chr4:40260714-40265352 (-)
FVB/NJ MGP_FVBNJ_G0028003
 protein coding gene Chr4:39487302-39494969 (-)
LP/J MGP_LPJ_G0028135
 protein coding gene Chr4:41894198-41898801 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028027
 protein coding gene Chr4:47976441-47981063 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028676
 protein coding gene Chr4:41479658-41484273 (-)
PWK/PhJ MGP_PWKPhJ_G0027087
 protein coding gene Chr4:40297559-40301868 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026913
 protein coding gene Chr4:41039551-41045043 (-)
WSB/EiJ MGP_WSBEiJ_G0027441
 protein coding gene Chr4:41371052-41375692 (-)



Homology
more
  • Human Ortholog
    OR13J1, olfactory receptor family 13 subfamily J member 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    OR13J1, olfactory receptor family 13 subfamily J member 1
  • Synonyms
    OR9-2
  • Links
    NCBI Gene ID: 392309
    neXtProt AC: NX_Q8NGT2
    UniProt: Q8NGT2

  • Chr Location
    9p13.3; chr9:35869463-35870401 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    711
  • Tissues
    1
  • cDNA Data
    9
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 56015 NCBI Gene Model | MGI Sequence Detail 939 C57BL/6J ±  kb
transcript NM_019486 RefSeq | MGI Sequence Detail 939 129X1/SvJ  
polypeptide NP_062359 RefSeq | MGI Sequence Detail 312 129X1/SvJ  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR017452 GPCR, rhodopsin-like, 7TM
    IPR000276 G protein-coupled receptor, rhodopsin-like
    IPR000725 Olfactory receptor
Molecular
Reagents
less
  • All nucleic 11
    Genomic 2
    cDNA 9

    Microarray probesets 3
Other
Accession IDs
less
MGI:7277355
References
more
  • Summaries
    All 22
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 4
  • Earliest
    J:57015 Strotmann J, et al., Small subfamily of olfactory receptor genes: structural features, expression pattern and genomic organization. Gene. 1999 Aug 20;236(2):281-91
  • Latest
    J:289678 Olender T, et al., A unified nomenclature for vertebrate olfactory receptors. BMC Evol Biol. 2020 Apr 15;20(1):42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory