Tcea1-ps1 Pseudogene Detail

Summary

• Symbol
  Tcea1-ps1
• Name
  transcription elongation factor A (SII) 1, pseudogene 1

• Feature Type
  pseudogene
• IDs
  MGI:1861432
  NCBI Gene: 56645
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:90766818-90767721 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, 45.31 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  18
• PCR
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1861432	pseudogene	Chr15:90766718-90768119 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011211	pseudogene	Chr15:92159698-92160654 (+)
A/J	MGP_AJ_G0011201	pseudogene	Chr15:88615485-88616303 (+)
AKR/J	MGP_AKRJ_G0011160	pseudogene	Chr15:91220144-91221099 (+)
BALB/cJ	MGP_BALBcJ_G0011169	pseudogene	Chr15:88715874-88716715 (+)
C3H/HeJ	MGP_C3HHeJ_G0011068	pseudogene	Chr15:91235499-91236347 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015435	pseudogene	ChrX:169414012-169414837 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013054	pseudogene	ChrX:154631528-154632354 (+)
CAST/EiJ	MGP_CASTEiJ_G0014390	pseudogene	ChrX:143814724-143815549 (+)
CBA/J	MGP_CBAJ_G0014773	pseudogene	ChrX:174356368-174357193 (+)
DBA/2J	MGP_DBA2J_G0014857	pseudogene	ChrX:162596993-162597818 (+)
FVB/NJ	MGP_FVBNJ_G0011097	pseudogene	Chr15:87105903-87106746 (+)
LP/J	MGP_LPJ_G0014958	pseudogene	ChrX:165741646-165742471 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011091	pseudogene	Chr15:103133514-103134357 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015420	pseudogene	ChrX:164100877-164101702 (+)
PWK/PhJ	MGP_PWKPhJ_G0014183	pseudogene	ChrX:140563800-140564625 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013969	pseudogene	ChrX:144338895-144339720 (+)
WSB/EiJ	MGP_WSBEiJ_G0014472	pseudogene	ChrX:161933362-161934187 (+)

Homology

• Gene Tree
  Tcea1-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  22 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Tcea1-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000067869 (Evidence)
• NCBI Gene
  56645

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000067869	Ensembl Gene Model | MGI Sequence Detail	904	C57BL/6J
transcript	ENSMUST00000117942	Ensembl | MGI Sequence Detail	904	Not Applicable

Molecular
Reagents

• All nucleic 1

  Primer pair 1

References

• Summaries
  All 26

  Diseases 1

  Phenotypes 22
• Earliest
  J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
• Latest
  J:285676 Suzuki A, et al., Genes and microRNAs associated with mouse cleft palate: A systematic review and bioinformatics analysis. Mech Dev. 2018 Apr;150:21-27

TSS for Tcea1-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr132706	Chr15:90767250-90767259 (+)	437 bp