About   Help   FAQ
Rhox9 Gene Detail
Summary
  • Symbol
    Rhox9
  • Name
    reproductive homeobox 9
  • Synonyms
    1600026O01Rik, Gpbox, Psx2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1890128
    NCBI Gene: 104384
  • Member of
    Rhox cluster
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:36987974-36990647 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 22.15 cM, cytoband A2
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    10 from dbSNP Build 142
  • Strain Annotations
    14
  • PCR
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1890128
 protein coding gene ChrX:36987974-36990647 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035655
 protein coding gene ChrX:32831971-32834831 (-)
A/J no annotation
AKR/J MGP_AKRJ_G0035557
 protein coding gene ChrX:33557191-33560434 (+)
BALB/cJ MGP_BALBcJ_G0035624
 protein coding gene ChrX:32590841-32597803 (-)
C3H/HeJ MGP_C3HHeJ_G0035329
 protein coding gene ChrX:33162608-33165152 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036154
 protein coding gene ChrX:33552530-33554804 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0035303
 protein coding gene ChrX:34378506-34381111 (-)
DBA/2J MGP_DBA2J_G0035455
 protein coding gene ChrX:32652912-32660450 (+)
FVB/NJ MGP_FVBNJ_G0035404
 protein coding gene ChrX:32387026-32389526 (+)
LP/J MGP_LPJ_G0035544
 protein coding gene ChrX:33210491-33212876 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035441
 protein coding gene ChrX:34674080-34677254 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036172
 protein coding gene ChrX:32765505-32770062 (+)
PWK/PhJ MGP_PWKPhJ_G0034321
 protein coding gene ChrX:20777806-20781360 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0034764
 protein coding gene ChrX:32476915-32483519 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
Mice homozygous for a trageted null mutation are viable and fertile with no gross morphological or histological abnormalities. No defects in the reproductive system were detected.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    834
  • Tissues
    70
  • cDNA Data
    27
  • Literature Summary
    7
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 104384 NCBI Gene Model | MGI Sequence Detail 2674 C57BL/6J ±  kb
transcript NM_023894 RefSeq | MGI Sequence Detail 898 Not Specified  
polypeptide NP_076383 RefSeq | MGI Sequence Detail 227 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • InterPro Domains
    IPR001356 Homeobox domain
    IPR009057 Homeobox-like domain superfamily
Molecular
Reagents
less
  • All nucleic 31
    cDNA 27
    Primer pair 3
    Other 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:1925663
References
more
  • Summaries
    All 34
    Developmental Gene Expression 7
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:63116 Takasaki N, et al., Gpbox (Psx2), a homeobox gene preferentially expressed in female germ cells at the onset of sexual dimorphism in mice. Dev Biol. 2000 Jul 1;223(1):181-93
  • Latest
    J:306454 Tan K, et al., The Rhox gene cluster suppresses germline LINE1 transposition. Proc Natl Acad Sci U S A. 2021 Jun 8;118(23):e2024785118
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory