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Galnt10 Gene Detail
Summary
  • Symbol
    Galnt10
  • Name
    polypeptide N-acetylgalactosaminyltransferase 10
  • Synonyms
    C330012K04Rik, GalNAc-T10, Galnt9
  • Feature Type
    protein coding gene
  • IDs
    MGI:1890480
    NCBI Gene: 171212
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:57536268-57678327 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 35.27 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    4727 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1890480
 protein coding gene Chr11:57536268-57678340 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018338
 protein coding gene Chr11:57271851-57420417 (+)
A/J MGP_AJ_G0018307
 protein coding gene Chr11:55113185-55255187 (+)
AKR/J MGP_AKRJ_G0018276
 protein coding gene Chr11:56928990-57072429 (+)
BALB/cJ MGP_BALBcJ_G0018278
 protein coding gene Chr11:55450634-55594750 (+)
C3H/HeJ MGP_C3HHeJ_G0018090
 protein coding gene Chr11:56839259-56988265 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018730
 protein coding gene Chr11:59018702-59177552 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016380
 protein coding gene Chr11:52471973-52615369 (+)
CAST/EiJ MGP_CASTEiJ_G0017654
 protein coding gene Chr11:56905682-57070095 (+)
CBA/J MGP_CBAJ_G0018064
 protein coding gene Chr11:61745146-61900254 (+)
DBA/2J MGP_DBA2J_G0018173
 protein coding gene Chr11:54757890-54899355 (+)
FVB/NJ MGP_FVBNJ_G0018165
 protein coding gene Chr11:54450388-54596775 (+)
LP/J MGP_LPJ_G0018248
 protein coding gene Chr11:57768066-57925517 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0018191
 protein coding gene Chr11:62887857-63038533 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018772
 protein coding gene Chr11:56939391-57093807 (+)
PWK/PhJ MGP_PWKPhJ_G0017427
 protein coding gene Chr11:55358235-55501889 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017222
 protein coding gene Chr11:56818094-56970344 (+)
WSB/EiJ MGP_WSBEiJ_G0017702
 protein coding gene Chr11:56589220-56743475 (+)



Homology
more
  • Human Ortholog
    GALNT10, polypeptide N-acetylgalactosaminyltransferase 10
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GALNT10, polypeptide N-acetylgalactosaminyltransferase 10
  • Synonyms
    GALNACT10, PPGALNACT10, PPGANTASE10
  • Links
    NCBI Gene ID: 55568
    neXtProt AC: NX_Q86SR1
    UniProt: Q86SR1

  • Chr Location
    5q33.2; chr5:154190730-154420984 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    12 phenotype references
Mice homozygous for a disruption in this gene display a normal phenotype.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    9
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    839
  • Tissues
    122
  • cDNA Data
    95
  • Literature Summary
    10
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 171212 NCBI Gene Model | MGI Sequence Detail 142060 C57BL/6J ±  kb
transcript NM_134189 RefSeq | MGI Sequence Detail 4725 Not Specified  
polypeptide Q6P9S7 UniProt | EBI | MGI Sequence Detail 603 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 101
    cDNA 97
    Primer pair 4

    Microarray probesets 6
Other
Accession IDs
less
MGI:1924599, MGI:2144381
References
more
  • Summaries
    All 50
    Developmental Gene Expression 10
    Gene Ontology 5
    Phenotypes 12
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory