Cbx3-ps3 Pseudogene Detail

Summary

• Symbol
  Cbx3-ps3
• Name
  chromobox 3, pseudogene 3
• Synonyms
  OTTMUSG00000000828

• Feature Type
  pseudogene
• IDs
  MGI:1890540
  NCBI Gene: 102641235
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:83619321-83620273 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 39.46 cM, cytoband C3-C5
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  157 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1890540	pseudogene	Chr4:83619217-83622732 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012739	pseudogene	Chr4:83306370-83307168 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013037	pseudogene	Chr4:86592687-86594879 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0012676	pseudogene	Chr4:83671858-83673417 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013043	pseudogene	Chr4:82551866-82553649 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Cbx3-ps3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Cbx3-ps3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000080793 (Evidence)
• NCBI Gene
  102641235

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080793	Ensembl Gene Model | MGI Sequence Detail	953	C57BL/6J
transcript	ENSMUST00000118595	Ensembl | MGI Sequence Detail	550	Not Applicable

Other
Accession IDs

MGI:3706948

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:32398 Singh PB, et al., A sequence motif found in a Drosophila heterochromatin protein is conserved in animals and plants. Nucleic Acids Res. 1991 Feb 25;19(4):789-94
• Latest
  J:75485 Jones DO, et al., The gene and pseudogenes of Cbx3/mHP1 gamma. DNA Seq. 2001;12(3):147-60