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Ccl19-ps1 Pseudogene Detail
Summary
  • Symbol
    Ccl19-ps1
  • Name
    C-C motif chemokine ligand 19, pseudogene 1
  • Synonyms
    ELC, Scya19-ps1
Location &
Maps
more
  • Sequence Map
    Chr4:41921405-41923020 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 22.13 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • Strain Annotations
    4
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1891387
 pseudogene Chr4:41921279-41923225 (+)
129S1/SvImJ no annotation
A/J MGP_AJ_G0040320
 pseudogene Chr4:38253880-39337631 (-)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0040321
 pseudogene Chr4:39439864-39441691 (-)
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0040076
 pseudogene Chr4:37499755-37501228 (-)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CCL19, C-C motif chemokine ligand 19
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCL19, C-C motif chemokine ligand 19
  • Synonyms
    CKb11, ELC, MIP-3b, MIP3B, SCYA19
  • Links
    NCBI Gene ID: 6363
    neXtProt AC: NX_Q99731
    UniProt: Q99731

  • Chr Location
    9p13.3; chr9:34689570-34691276 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
    22
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    9
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000082902 Ensembl Gene Model | MGI Sequence Detail 1616 C57BL/6J ±  kb
transcript ENSMUST00000119621 Ensembl | MGI Sequence Detail 327 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    Genomic 3
References
more
  • Summaries
    All 7
    Gene Ontology 1
    Phenotypes 1
  • Earliest
    J:66381 Nakano H, et al., Gene duplications at the chemokine locus on mouse chromosome 4: multiple strain-specific haplotypes and the deletion of secondary lymphoid-organ chemokine and EBI-1 ligand chemokine genes in the plt mutation. J Immunol. 2001 Jan 1;166(1):361-9
  • Latest
    J:76755 IUIS/WHO Subcommittee on Chemokine Nomenclature, Chemokine/chemokine receptor nomenclature. J Immunol Methods. 2002 Apr 1;262(1-2):1-3
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory