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Nicn1 Gene Detail
Summary
  • Symbol
    Nicn1
  • Name
    nicolin 1
  • Synonyms
    1500032A17Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913507
    NCBI Gene: 66257
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:108167642-108173697 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 59.18 cM, cytoband F2
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    193 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913507
 protein coding gene Chr9:108167628-108173697 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035289
 protein coding gene Chr9:110235924-110241841 (+)
A/J MGP_AJ_G0035268
 protein coding gene Chr9:106199055-106205148 (+)
AKR/J MGP_AKRJ_G0035200
 protein coding gene Chr9:108849521-108855428 (+)
BALB/cJ MGP_BALBcJ_G0035262
 protein coding gene Chr9:105897123-105902983 (+)
C3H/HeJ MGP_C3HHeJ_G0034972
 protein coding gene Chr9:109244897-109252069 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035782
 protein coding gene Chr9:113219473-113225245 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032680
 protein coding gene Chr9:103631513-103637163 (+)
CAST/EiJ MGP_CASTEiJ_G0034283
 protein coding gene Chr9:109218470-109224057 (+)
CBA/J MGP_CBAJ_G0034940
 protein coding gene Chr9:117229256-117237433 (+)
DBA/2J MGP_DBA2J_G0035101
 protein coding gene Chr9:105656736-105662629 (+)
FVB/NJ MGP_FVBNJ_G0035049
 protein coding gene Chr9:104421262-104427853 (+)
LP/J MGP_LPJ_G0035177
 protein coding gene Chr9:110432624-110440777 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035088
 protein coding gene Chr9:118812836-118820506 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035803
 protein coding gene Chr9:109145080-109151271 (+)
PWK/PhJ MGP_PWKPhJ_G0033990
 protein coding gene Chr9:105981092-105989520 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033825
 protein coding gene Chr9:109191581-109197360 (+)
WSB/EiJ MGP_WSBEiJ_G0034404
 protein coding gene Chr9:109017634-109023084 (+)



Homology
more
  • Human Ortholog
    NICN1, nicolin 1, tubulin polyglutamylase complex subunit
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NICN1, nicolin 1, tubulin polyglutamylase complex subunit
  • Links
    NCBI Gene ID: 84276
    neXtProt AC: NX_Q9BSH3
    UniProt: Q9BSH3

  • Chr Location
    3p21.31; chr3:49422333-49429326 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    4
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    762
  • Tissues
    11
  • cDNA Data
    64
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 66257 NCBI Gene Model | MGI Sequence Detail 6056 C57BL/6J ±  kb
transcript NM_001364505 RefSeq | MGI Sequence Detail 2122 C57BL/6  
polypeptide Q9CQM0 UniProt | EBI | MGI Sequence Detail 213 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 64
    cDNA 64

    Microarray probesets 4
References
more
  • Summaries
    All 35
    Developmental Gene Expression 3
    Gene Ontology 4
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:313619 Bedogni F, et al., Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Front Mol Neurosci. 2021;14:686034
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory