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Pantr1 Gene Detail
Summary
  • Symbol
    Pantr1
  • Name
    POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1
  • Synonyms
    2610017I09Rik, linc-Brn1a, Pou3f3os
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1913547
    NCBI Gene: 66297
  • Alliance
    gene page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:42687360-42733985 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 21.08 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1017 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913547
 lncRNA gene Chr1:42629754-42734584 (-)
129S1/SvImJ MGP_129S1SvImJ_G0004816
 lincRNA gene Chr1:41531094-41642888 (-)
A/J MGP_AJ_G0004797
 lincRNA gene Chr1:40300366-40408848 (-)
AKR/J MGP_AKRJ_G0004776
 lincRNA gene Chr1:40820144-40920362 (-)
BALB/cJ MGP_BALBcJ_G0004779
 lincRNA gene Chr1:39963147-40066740 (-)
C3H/HeJ MGP_C3HHeJ_G0004727
 lincRNA gene Chr1:41190489-41298506 (-)
C57BL/6NJ MGP_C57BL6NJ_G0004929
 lincRNA gene Chr1:43255226-43366728 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0004361
 lincRNA gene Chr1:37136313-37235701 (-)
CAST/EiJ MGP_CASTEiJ_G0004683
 lincRNA gene Chr1:41167348-41279635 (-)
CBA/J MGP_CBAJ_G0004720
 lincRNA gene Chr1:44528047-44639316 (-)
DBA/2J MGP_DBA2J_G0004738
 lincRNA gene Chr1:39572109-39675063 (-)
FVB/NJ MGP_FVBNJ_G0004758
 lincRNA gene Chr1:39102887-39205948 (-)
LP/J MGP_LPJ_G0004817
 lincRNA gene Chr1:41876259-41985739 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0004743
 lincRNA gene Chr1:46510452-46620648 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0004933
 lincRNA gene Chr1:41011999-41123761 (-)
PWK/PhJ MGP_PWKPhJ_G0004635
 lincRNA gene Chr1:39431893-39535842 (-)
SPRET/EiJ MGP_SPRETEiJ_G0004562
 lincRNA gene Chr1:41014921-41120454 (-)
WSB/EiJ MGP_WSBEiJ_G0004725
 lincRNA gene Chr1:41053579-41162593 (-)



Homology
more
  • Human Ortholog
    PANTR1, POU3F3 adjacent non-coding transcript 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PANTR1, POU3F3 adjacent non-coding transcript 1
  • Synonyms
    LINC01114, LINC01158, linc-Brn1a, linc-POU3F3
  • Links
    NCBI Gene ID: 100506421

  • Chr Location
    chr2:104656012-104857008 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    6 phenotype references
Mice homozygous for a null allele are viable.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    718
  • Tissues
    12
  • cDNA Data
    26
  • Literature Summary
    8
Sequences &
Gene Models
less
  • All Sequences
    64
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 66297 NCBI Gene Model | MGI Sequence Detail 46626 C57BL/6J ±  kb
transcript NR_027826 RefSeq | MGI Sequence Detail 546 C57BL/6  
polypeptide Q8BTB3 UniProt | EBI | MGI Sequence Detail 65 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 28
    cDNA 26
    Primer pair 1
    Other 1

    Microarray probesets 1
References
more
  • Summaries
    All 23
    Developmental Gene Expression 8
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:338811 Qu F, et al., Three-dimensional molecular architecture of mouse organogenesis. Nat Commun. 2023 Jul 31;14(1):4599
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory