About   Help   FAQ
Galntl6 Gene Detail
Summary
  • Symbol
    Galntl6
  • Name
    UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6
  • Synonyms
    1700021K10Rik, 4930431L04Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913581
    NCBI Gene: 270049
  • Alliance
    gene page
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:58227086-59365674 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 30.72 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    35157 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913581
 protein coding gene Chr8:58225523-59366213 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033626
 protein coding gene Chr8:57522632-58738770 (-)
A/J MGP_AJ_G0033608
 protein coding gene Chr8:55086918-56237814 (-)
AKR/J MGP_AKRJ_G0033533
 protein coding gene Chr8:56718538-57869736 (-)
BALB/cJ MGP_BALBcJ_G0033604
 protein coding gene Chr8:55403173-56513477 (-)
C3H/HeJ MGP_C3HHeJ_G0033314
 protein coding gene Chr8:57384800-58550331 (-)
C57BL/6NJ MGP_C57BL6NJ_G0034121
 protein coding gene Chr8:59724072-60943001 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0031069
 protein coding gene Chr8:50628204-51684423 (-)
CAST/EiJ MGP_CASTEiJ_G0032639
 protein coding gene Chr8:56775907-57961728 (-)
CBA/J MGP_CBAJ_G0033292
 protein coding gene Chr8:61853567-63204533 (-)
DBA/2J MGP_DBA2J_G0033446
 protein coding gene Chr8:54892467-55996005 (-)
FVB/NJ MGP_FVBNJ_G0033387
 protein coding gene Chr8:54245540-55349128 (-)
LP/J MGP_LPJ_G0033534
 protein coding gene Chr8:57523807-58700493 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033431
 protein coding gene Chr8:63463236-65000199 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0034139
 protein coding gene Chr8:56970203-58140223 (-)
PWK/PhJ MGP_PWKPhJ_G0032348
 protein coding gene Chr8:54213192-55358766 (-)
SPRET/EiJ MGP_SPRETEiJ_G0032184
 protein coding gene Chr8:55840709-57063294 (-)
WSB/EiJ MGP_WSBEiJ_G0032756
 protein coding gene Chr8:57215063-58435669 (-)



Homology
more
  • Human Ortholog
    GALNTL6, polypeptide N-acetylgalactosaminyltransferase like 6
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GALNTL6, polypeptide N-acetylgalactosaminyltransferase like 6
  • Synonyms
    GALNACT20, GalNAc-T6L, GALNT17
  • Links
    NCBI Gene ID: 442117
    neXtProt AC: NX_Q49A17
    UniProt: Q49A17

  • Chr Location
    4q34.1; chr4:171812254-173041559 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    865
  • Tissues
    103
  • cDNA Data
    7
  • Literature Summary
    4
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000096914 Ensembl Gene Model | MGI Sequence Detail 1138589 C57BL/6J ±  kb
transcript ENSMUST00000204128 Ensembl | MGI Sequence Detail 5680 Not Applicable  
polypeptide ENSMUSP00000145321 Ensembl | MGI Sequence Detail 601 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7

    Microarray probesets 4
Other
Accession IDs
less
MGI:1921140
References
more
  • Summaries
    All 26
    Developmental Gene Expression 4
    Gene Ontology 2
    Phenotypes 7
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory