2410004B18Rik MGI Mouse Gene Detail - MGI:1913671

Symbol

2410004B18Rik
Name

RIKEN cDNA 2410004B18 gene
Synonyms

4930572C24Rik

Feature Type

protein coding gene
IDs

MGI:1913671
NCBI Gene: 66421
Alliance

gene page
Transcription Start Sites

1 TSS

Sequence Map

Chr3:145643769-145650584 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, 71.03 cM, cytoband H3
Mapping Data

2 experiments

SNPs within 2kb

327 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1913671	protein coding gene	Chr3:145643769-145650584 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0027964	protein coding gene	Chr3:149394915-149401731 (+)
A/J	MGP_AJ_G0027923	protein coding gene	Chr3:144072257-144079073 (+)
AKR/J	MGP_AKRJ_G0027889	protein coding gene	Chr3:147898296-147905112 (+)
BALB/cJ	MGP_BALBcJ_G0027935	protein coding gene	Chr3:143890017-143896833 (+)
C3H/HeJ	MGP_C3HHeJ_G0027665	protein coding gene	Chr3:148269092-148275908 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0028378	protein coding gene	Chr3:154459691-154466506 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025716	protein coding gene	Chr3:139147113-139153935 (+)
CAST/EiJ	MGP_CASTEiJ_G0027118	protein coding gene	Chr3:148228393-148235198 (+)
CBA/J	MGP_CBAJ_G0027640	protein coding gene	Chr3:159885175-159891991 (+)
DBA/2J	MGP_DBA2J_G0027780	protein coding gene	Chr3:143212054-143218869 (+)
FVB/NJ	MGP_FVBNJ_G0027747	protein coding gene	Chr3:140622786-140629601 (+)
LP/J	MGP_LPJ_G0027891	protein coding gene	Chr3:150788779-150795595 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027780	protein coding gene	Chr3:168191715-168198531 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0028437	protein coding gene	Chr3:147494723-147501539 (+)
PWK/PhJ	MGP_PWKPhJ_G0026841	protein coding gene	Chr3:143060056-143066948 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0026669	protein coding gene	Chr3:145656553-145663541 (+)
WSB/EiJ	MGP_WSBEiJ_G0027198	protein coding gene	Chr3:148451774-148458597 (+)

Human Ortholog

C1orf52, chromosome 1 open reading frame 52

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C1orf52, chromosome 1 open reading frame 52
Synonyms

gm117
Links

HGNC:24871

NCBI Gene ID: 148423

neXtProt AC: NX_Q8N6N3

UniProt: Q8N6N3
Chr Location

1p22.3; chr1:85249953-85259672 (-) GRCh38

MGI Vertebrate Homology

2410004B18Rik stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: C1orf52
Gene Tree

2410004B18Rik

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References

1 with disease annotations

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Phenotype Summary

6 phenotype references

All Mutations and Alleles

4
Gene trapped

2
Radiation induced

1
Targeted

1
Genomic Mutations

1 involving 2410004B18Rik
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

11 strains or lines available

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All GO Annotations

2
GO References

2

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

717
Tissues

6
cDNA Data

7
Literature Summary

1

Images

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

ZFIN zgc:65873

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All Sequences

53
RefSeq

6
UniProt

5
CCDS

CCDS17898.1

Ensembl

ENSMUSG00000036873 (Evidence)
NCBI Gene

66421

			Length	Strain/Species	Flank
genomic	66421	NCBI Gene Model \| MGI Sequence Detail	6816	C57BL/6J	± kb
transcript	NR_151446	RefSeq \| MGI Sequence Detail	1709	C57BL/6
polypeptide	Q9CWU4	UniProt \| EBI \| MGI Sequence Detail	180	Not Applicable

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UniProt

5 Sequences
Protein Ontology

PR:000059937 UPF0690 protein C1orf52

(term hierarchy)
InterPro Domains

IPR029089 Protein of unknown function DUF4660

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All nucleic 9

Genomic 1

cDNA 8

Microarray probesets 5

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MGI:1925311

Summaries

All 26

Developmental Gene Expression 1

Diseases 1

Gene Ontology 2

Phenotypes 6
Earliest

J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
Latest

J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for 2410004B18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32317	Chr3:145643759-145643818 (+)	20 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 11/12/2024 MGI 6.24